LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0278	ATGGCTATCCGCGTAACCTTCTCCTTCTCCGGCTATGTCGCCCACAACCTTGTCTCCACCGCCACCTCCCGCATATCCAATTCCCGCTGCCTCCAAGAATGCTGGATCCATTCTCGCCTCTTCGGAGTTAGCCCAAAACATGACCGAGATCCCACCGCCGGTGTCCGAAGCTTCCATTCCGATCATCTCCGGCGGCCGAAGCTACGCAATCCTTGCGCCTACACCACCCTCGCCGGAGAGATTTTCGGCGATAACTGCAGCAACCCGATCGTCTTGGGCTTGATCTCCATGATGAAGTCAACGGTCGGAGTTTCTGGTTCGTCGTCGGCTTCCGTGGGTATTTTCGGTATTTCGCCCTTCAAGACCTCTTCCATCATACCTTTCTTGCAGGGTTCTAAGTGGCTTCCGTGTAACGAATCCGTCCCTAATCCTACCACCACAAACTGGGAGGTCGATAAGGGCGGAACGCTGTGTTCGGAGGAGGTGGCTGCTAGCGCTGTCTCCGCTGTTGAAGCTGGGAAGAGCAGGTGGCTCTCGCGGGTGTTGAACGTGTGTTCCGAGGATGCGAAGGCCGCGTTCACCGCCGTCACCGTTAGCTTGCTCTTCAAGTCCTTCTTGGCTGAACCTAGGTCTATTCCCTCTTCCTCTATGTACCCAACCCTCGAAGTCGGTGATCGCATTATGGCCGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTAATGTTTCAGATATAGTGATTTTTAAGGCACCTCCTGTTTTACAAGAATTTGGTTTCTCTTCCTCTGATGTGTTTATAAAAAGGGTTGTAGCTAAGGCTGGAGACACTGTTGAAGTTCGAGATGGTAAATTACTTGTGAATGGCGTTGCTGAAGAAGAGGAATTCATTTTAGAGCCTCTTGCTTATGAAATGGAATTAACGGTTGTGCCAGAAGGATATGTTTTTGTGTTAGGAGATAACCGTAATAACAGCTTTGACTCACATAACTGGGGTCCACTCCCTCTTGAGAGCATTGTTGGTAGATCCATGTTTCGGTACTGGCCTCCATCCAAAGTATCTGACATCGATGCACATCATAAACTCACATCTGGAAACAAGGCTGTGGCAATTTCCTGA	1113	0.4978	MAIRVTFSFSGYVAHNLVSTATSRISNSRCLQECWIHSRLFGVSPKHDRDPTAGVRSFHSDHLRRPKLRNPCAYTTLAGEIFGDNCSNPIVLGLISMMKSTVGVSGSSSASVGIFGISPFKTSSIIPFLQGSKWLPCNESVPNPTTTNWEVDKGGTLCSEEVAASAVSAVEAGKSRWLSRVLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEVGDRIMAEKFSFFFRKPNVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKAGDTVEVRDGKLLVNGVAEEEEFILEPLAYEMELTVVPEGYVFVLGDNRNNSFDSHNWGPLPLESIVGRSMFRYWPPSKVSDIDAHHKLTSGNKAVAIS*	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0278	370	ProSitePatterns	Signal peptidases I serine active site.	214	221	IPR019756	GO:0004252\|GO:0016021
	Ahy8g0278	370	PANTHER	SIGNAL PEPTIDASE I	1	358	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ahy8g0278	370	SUPERFAMILY	LexA/Signal peptidase	204	352	IPR036286	-
	Ahy8g0278	370	TIGRFAM	sigpep_I_bact: signal peptidase I	192	347	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ahy8g0278	370	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	205	221	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ahy8g0278	370	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	264	276	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ahy8g0278	370	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	308	327	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Ahy8g0278	370	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	358	-	-
	Ahy8g0278	370	CDD	S26_SPase_I	208	340	IPR019533	GO:0004252\|GO:0006465
	Ahy8g0278	370	Pfam	Signal peptidase, peptidase S26	189	346	IPR019533	GO:0004252\|GO:0006465
	Ahy8g0278	370	ProSitePatterns	Signal peptidases I signature 3.	313	326	IPR019758	GO:0004252\|GO:0016021
	Ahy8g0278	370	Gene3D	Umud Fragment, subunit A	202	360	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0278	Ahy-Chr8	5759045	5761720	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g0278	217	347	MADS-box Gene Family	AT1G29960	33.083	6.32e-14	66.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g0278	K03100		-	gmx:100817525	511.531

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g2475	17	118454384	118457200	Ahy8g0278	8	5759045	5761720	hybridization