Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0230 ATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGCCGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAGTGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATTAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAGTCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGCGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAGTCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACGGTCCCTCGAGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGGTGAAGATGTCCCAGGCACAACATTCACTATCTCAACAGGATCATTTGCAGCAGCAGCAACTGCAGCAGAACAACCGGAAAAGGAAACAACATTCTTCTTCTGGACCTGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACAGGTGGCCTTGCATCGTCTTCTAATTTGCTTGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAATCATCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTACTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACGCATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACTCTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACCGGTATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2352 0.4396 MKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLSAMNSEGMLGQQPTNVLAIKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKVKMSQAQHSLSQQDHLQQQQLQQNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHSEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0230 783 Pfam LisH 19 45 IPR006594 GO:0005515
Ahy8g0230 783 Pfam WD domain, G-beta repeat 747 783 IPR001680 GO:0005515
Ahy8g0230 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Ahy8g0230 783 Pfam WD domain, G-beta repeat 543 576 IPR001680 GO:0005515
Ahy8g0230 783 Pfam WD domain, G-beta repeat 665 699 IPR001680 GO:0005515
Ahy8g0230 783 Gene3D - 636 783 IPR015943 GO:0005515
Ahy8g0230 783 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 12 783 - -
Ahy8g0230 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Ahy8g0230 783 SUPERFAMILY WD40 repeat-like 500 783 IPR036322 GO:0005515
Ahy8g0230 783 Coils Coil 88 108 - -
Ahy8g0230 783 MobiDBLite consensus disorder prediction 301 417 - -
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Ahy8g0230 783 MobiDBLite consensus disorder prediction 301 319 - -
Ahy8g0230 783 CDD WD40 506 783 - -
Ahy8g0230 783 Gene3D - 480 635 IPR015943 GO:0005515
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Ahy8g0230 783 MobiDBLite consensus disorder prediction 330 417 - -
Ahy8g0230 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Ahy8g0230 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Ahy8g0230 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Ahy8g0230 783 SMART Lish 17 49 IPR006594 GO:0005515
Ahy8g0230 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Ahy8g0230 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Ahy8g0230 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Ahy8g0230 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Ahy8g0230 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 783 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0230 Ahy-Chr8 4390751 4400607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0230 520 768 U-box Gene Family AT2G33340 28.682 2.53e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy8g0230 WD40 0.006 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0230 - - qsu:111995984 1157.51