LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0189	ATGAGAGATGGTGGAGTGTTATCATCAGGTACCATGCTGGAACCTACTCCTCCTCCTCCTCCTCCTCCTCCACCACCACCACCACCAGCACCACCTCCTTCAGAGGTAGCAACAACAACAACATCAATATCAATGGACTATGATTACATCAATGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGATGGATCTGCTGATTTCTATGTGCCAAGTCCTTCTTTTTCAAACCCCATATTTGATCCATTCTCTTGGCCTTGCTTGGATACTGAACAAATTGAATCCCAAGAACGAGAACGAGAACAAGAACATGAACATGAAAAACAACAACAACCACCACCTTTTAGCCATGACTTAGTTGTTGCTGCTAATAGTTGTAGCCGGAATCAGCAACAACAGTATCATCACTATGAGAATCAGTCAGTGGAAAACAATAATCCAAATCCTAATAATCCTTCTGAGTTTTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCGGGACCTGGATCTTATGTCGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATGAACAGAGGAGGCACTCAGATTCTCAGAACCAATGGGCTTCCATTCTCACTTGAATCAAGGTCTGTGAACCTTGCAAAGTACAGGGAAATCTCGGAGGTGTACCAGTTCTCTGCCGAGGAGGATTCGAAGGAGTTGGTGCCCGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTGAGAGGATCATTGGCACTTCCAATCTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTGTTGAAGTTGTCATGACTCAACAGAAAATCAACTATCGCCCTGAACTTGAAAGTGTTTGCCAAGCACTTGAGGCTGTTAATCTTACAAGCTCAAAACTTCCAACTATTCAGAATGTGAAGCATACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCAAACAAGGCAAAGAAGGATGCCGGCACTCAGAAGACAACTATCCACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTTGGTGACCCTTCAATCCAGGTCTTTCATGAGGCATGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCACCCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCAGTCGCCATACGCTTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGAATGCATTGACAATGATGAACAGAAGAAGATGCTCACTTCATTGTCATTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTGGAGGAGGAAACTGATTTTTCAGTTGAAGAAGTGATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGCGTGGCCAGAACCACTGCAGAGTCAAATTGTTGCTTCATTGGGTGCTCAAGAAAAATCAAGTGAAACTATGGGGACGAGTTTCTCCGACCAAAGGCAACAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGGGAGTGTTCTACTTATAATGTCGGGAACTTGTCAAGTAAAACCGGAGACAAGAAGAAGAGCAAAGTAGATAAGACTATCACTCTGCAAGTTCTTCGCCAACACTTCGCCGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTTGTACTACAACGTTAAAAAGGATCTGCCGGCAACATGGGATAAAACGTTGGCCTTCAAGGAAGATCAAGAAGGTTGGTCATTCCTTGCAGAAGCTTCAACTTGTAATCGACTCGGTCCAAGGTGCTTCTGGTGCATTCCAAATAGATTCCTTCTATTCAAAATTCCCAGACTTAGCTGCTTCTCCAAATCTATCAGGAACAAGCCTGTTCTCAAATCTCAAGCAATGTGATAATAATCCAAACTCACTAAGCATACAGCCGGATCCTGGTTCGCTGAGTCCGGAAGGCGCATCAAAATCGCCGTCCTCTTCTTGCAGCCAGAGCTCGATTTCTAGCCATCCATGTTCCAGCATGGCTGAGCAACAGAATCATCATCTCACAAATAATAATTTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAGCGGCGATGGCTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGAAAAGCTTGAATGAAGATAGAGTAAAAATAGTCATGCCAAGATCGCAAAGTCAAGAAACACTTGGTCAACATAACGTTCAAAATGGGCACCATGGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAGGATGCAGCTTATAGAGTGAAAGTAACATATGGGGATGAGAAAGCAAGGTTCAAGATGCCTAAGAATTGGGGCTATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGAGCAAATTTGATGTCAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGTCTTCAACTCTCTAATACTAATCATAGTATGCGAAACCCTTTAGAATTTAGATAG	2895	0.4263	MRDGGVLSSGTMLEPTPPPPPPPPPPPPPAPPPSEVATTTTSISMDYDYINELFVDGCWLAASSSSAAAAAADGSADFYVPSPSFSNPIFDPFSWPCLDTEQIESQEREREQEHEHEKQQQPPPFSHDLVVAANSCSRNQQQQYHHYENQSVENNNPNPNNPSEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVMNRGGTQILRTNGLPFSLESRSVNLAKYREISEVYQFSAEEDSKELVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVVEVVMTQQKINYRPELESVCQALEAVNLTSSKLPTIQNVKHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIKQGKEGCRHSEDNYPHCISPVEHACYVGDPSIQVFHEACSEHHLLKGQGVAGGAFMTNQPCFAPDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLECIDNDEQKKMLTSLSLIIQRVCHSLRVISDKELEEETDFSVEEVIAHEDSGTFASAAAWPEPLQSQIVASLGAQEKSSETMGTSFSDQRQQQQESSVLKGNLDSNGECSTYNVGNLSSKTGDKKKSKVDKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLAASPNLSGTSLFSNLKQCDNNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSMAEQQNHHLTNNNFDSSKDQMVLLVGENSSGDGLLKRIRSEAELKSLNEDRVKIVMPRSQSQETLGQHNVQNGHHGSLSRTKSKGTQKEDAAYRVKVTYGDEKARFKMPKNWGYEDLVQEVGRRFCISDMSKFDVKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQLSNTNHSMRNPLEFR*	965

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	1	40	-	-
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	835	865	-	-
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	738	780	-	-
	Ahy8g0189	964	PANTHER	PROTEIN NLP8	43	954	IPR045012	GO:0003700
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	103	126	-	-
	Ahy8g0189	964	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	19	28	-	-
	Ahy8g0189	964	PANTHER	PROTEIN NLP4	43	954	-	-
	Ahy8g0189	964	Pfam	RWP-RK domain	636	684	IPR003035	-
	Ahy8g0189	964	ProSiteProfiles	RWP-RK domain profile.	623	704	IPR003035	-
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	13	35	-	-
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	835	856	-	-
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	583	608	-	-
	Ahy8g0189	964	SMART	PB1_new	868	951	IPR000270	GO:0005515
	Ahy8g0189	964	MobiDBLite	consensus disorder prediction	103	122	-	-
	Ahy8g0189	964	Gene3D	-	865	948	-	-
	Ahy8g0189	964	CDD	PB1_NLP	870	949	IPR034891	-
	Ahy8g0189	964	SUPERFAMILY	CAD & PB1 domains	862	951	-	-
	Ahy8g0189	964	Pfam	PB1 domain	869	949	IPR000270	GO:0005515
	Ahy8g0189	964	ProSiteProfiles	PB1 domain profile.	868	951	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0189	Ahy-Chr8	3693761	3698135	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g0189	44	949	NLP Transcription Factor Family	AT4G35270	41.952	0.0	659

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Ahy8g0189		PB1	1.00E-18	CL0072