Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0163 ATGTCCTCTTCCACCGTTGGCAATGAGGAGAAGCTTTACCCTTCCCCACTAGCCTCTCACGACGACATCGTCAAGGACCCTTCTGTCTTTTGGGATACTCTCAGACGCTTTCACCTCCTTCTCAGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTCCTGTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGAACTGTCTTCAGGTTCTCAGCGACGACTACAAGCGCCTCTTTTGTGCTCAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTTAAGGGTCCTCTATACTCTCCATCATCAGATTCATTTTCTGGCAGCAAGCACTCCTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAGTGACCCATACTAAAGGTTCCAAACCTCAAGAGTCTATAGACCCTTCATCAAATCTTTCAGGGAGGGGAACGATAGAGGGAAAATTTGAATGCGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTGCTGTACCATCCAGAGGAATTGGTTCCTCCCCCAACTGTTCCACAAAATGGCAATGCCATCGTACCCTACGGCTGCAAACCTCACCATTCCGGCCGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAACTACCCGAAGCCAAATCGGAGTGGTTATAACTTCTTCTTTGCTGAGAGGCATTACAAGCTCAAGTCACTTTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAAGGAGTACAAGGAAAAGATGAAGACTATGCAAAATTTAGAAGTTGCGGCGCCCAGAAATCTCACTGGTTCTGTCCTTAATGGTAGCCAAAGAATGGCTTAG 1020 0.4667 MSSSTVGNEEKLYPSPLASHDDIVKDPSVFWDTLRRFHLLLSTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFRFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYSPSSDSFSGSKHSWRSELAIVEYSPKPVTHTKGSKPQESIDPSSNLSGRGTIEGKFECGYLVSVKVGSEVLRGVLYHPEELVPPPTVPQNGNAIVPYGCKPHHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAERHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELKEYKEKMKTMQNLEVAAPRNLTGSVLNGSQRMA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0163 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Ahy8g0163 339 SMART hmgende2 242 311 IPR009071 -
Ahy8g0163 339 SMART ARID_2 21 111 - -
Ahy8g0163 339 CDD HMGB-UBF_HMG-box 243 307 - -
Ahy8g0163 339 Gene3D High mobility group box domain 227 327 IPR036910 -
Ahy8g0163 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 319 - -
Ahy8g0163 339 MobiDBLite consensus disorder prediction 219 243 - -
Ahy8g0163 339 SUPERFAMILY ARID-like 20 118 IPR036431 GO:0003677
Ahy8g0163 339 Gene3D - 17 121 IPR036431 GO:0003677
Ahy8g0163 339 SUPERFAMILY HMG-box 240 315 IPR036910 -
Ahy8g0163 339 Coils Coil 299 322 - -
Ahy8g0163 339 MobiDBLite consensus disorder prediction 224 238 - -
Ahy8g0163 339 MobiDBLite consensus disorder prediction 153 171 - -
Ahy8g0163 339 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Ahy8g0163 339 CDD ARID_HMGB9-like 26 111 IPR045303 GO:0003677
Ahy8g0163 339 ProSiteProfiles ARID domain profile. 24 115 IPR001606 GO:0003677
Ahy8g0163 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 319 - -
Ahy8g0163 339 SMART bright_3 25 116 IPR001606 GO:0003677
Ahy8g0163 339 MobiDBLite consensus disorder prediction 148 171 - -
Ahy8g0163 339 Pfam ARID/BRIGHT DNA binding domain 30 111 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0163 Ahy-Chr8 3110048 3113197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0163 11 314 ARID Transcription Factor Family AT1G76110 64.935 3.97e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy8g0163 ARID 6.20E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0163 - - adu:107460270 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2213 17 106192065 106195203 Ahy8g0163 8 3110048 3113197 hybridization