LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy8g0152	ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCCATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATCCCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGTTTGTAGAGCCAAGCTTGACCCTCAGCTTTTCACTCCTCAGAGCCATTGCTGA	384	0.5573	MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTPQSHC*	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy8g0152	127	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	34	119	IPR013083	-
	Ahy8g0152	127	SUPERFAMILY	RING/U-box	70	120	-	-
	Ahy8g0152	127	PANTHER	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	1	125	-	-
	Ahy8g0152	127	SMART	ring_2	71	112	IPR001841	-
	Ahy8g0152	127	Pfam	Ring finger domain	70	113	IPR001841	-
	Ahy8g0152	127	ProSiteProfiles	Zinc finger RING-type profile.	71	113	IPR001841	-
	Ahy8g0152	127	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL23	1	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy8g0152	Ahy-Chr8	2811473	2812807	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy8g0152	1	120	C3H Transcription Factor Family	AT5G42200	55.906	5.60e-45	142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy8g0152	K19037		-	gmx:100776003	222.631

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy17g2230	17	108028517	108029843	Ahy8g0152	8	2811473	2812807	hybridization
	Ahy16g0035	16	327521	328445	Ahy8g0152	8	2811473	2812807	PCT
	Ahy6g1307	6	19740405	19741295	Ahy8g0152	8	2811473	2812807	PCT
	Ahy8g0152	8	2811473	2812807	Ahy16g0035	16	327521	328445	PCT
	Ahy8g0152	8	2811473	2812807	Ahy6g1307	6	19740405	19741295	PCT