Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0146 ATGGTTACCACCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAACCTACCTTCTCCTTGGGCTCAAGTCGTTCGCGGCACCGACGTTGAGCCACCCTCCGCCGCCGTCCACCAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCCGTTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGAATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCAAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTCACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACTTAATCCAACATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAAAGTGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCCCCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTCCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGGAACTTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCATCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGGGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGTTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTTCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTTTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATTATAGAAGTGAAGGGTGATAAGTTGAGAAGGCGGAAGGATTGGATGAAGTGGCTGCCCACTCCCTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCGGCAACTGATTTTGAAAAGATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACGAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1677 0.4729 MVTTAADSSSNHHSPIVAAATTTNVPTSNLNFPRKNLPSPWAQVVRGTDVEPPSAAVHQLLSPSSCSSSSATDQLLQSSDPSPPFESSNSDGATAAAASVDSLNADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVASHSPRKQGVGNARLNPTSVYGGAGRQRLIKCGGGNVNGNGNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSPVGSFVPPMIEHRSPSRRGTFGHHPRTGGSFHNYGIRSDQDRQNYAHTRDPQLHPPRMFPTRAMGPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPSAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPTPLNRADFGSTSMGGSSYNNSATDFEKITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0146 558 Pfam La domain 410 465 IPR006630 -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 295 317 - -
Ahy8g0146 558 SMART la 404 482 IPR006630 -
Ahy8g0146 558 SUPERFAMILY "Winged helix" DNA-binding domain 397 488 IPR036390 -
Ahy8g0146 558 PRINTS Lupus La protein signature 413 430 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy8g0146 558 PRINTS Lupus La protein signature 468 481 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Ahy8g0146 558 MobiDBLite consensus disorder prediction 528 558 - -
Ahy8g0146 558 CDD LAM 408 481 - -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 144 168 - -
Ahy8g0146 558 Gene3D - 398 487 IPR036388 -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 59 97 - -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 59 125 - -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 144 198 - -
Ahy8g0146 558 PANTHER LUPUS LA PROTEIN-RELATED 53 546 IPR045180 -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 1 36 - -
Ahy8g0146 558 ProSiteProfiles La-type HTH domain profile. 400 489 IPR006630 -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 211 239 - -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 213 227 - -
Ahy8g0146 558 MobiDBLite consensus disorder prediction 1 39 - -
Ahy8g0146 558 PANTHER LA-RELATED PROTEIN 1B 53 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0146 Ahy-Chr8 2722468 2725188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy8g0146 K18757 - gmx:100775279 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2236 17 108273863 108276496 Ahy8g0146 8 2722468 2725188 hybridization
Ahy16g0042 16 371942 376175 Ahy8g0146 8 2722468 2725188 PCT
Ahy6g1299 6 19620345 19624713 Ahy8g0146 8 2722468 2725188 PCT
Ahy8g0146 8 2722468 2725188 Ahy16g0042 16 371942 376175 PCT
Ahy8g0146 8 2722468 2725188 Ahy6g1299 6 19620345 19624713 PCT