Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy8g0092 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTGGCCCACACAGCAACAAGGAAGAAGAAGGAGAAAGAGTAGCAGAAAAACATCATCAAGACCATCACAACAGCAATAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAAAGGAGGATTCGAGATATGGCCGCAGCCCTACCACCAAAACCAAGGTTTCAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTACTCATCAACCTAGAAGGAACCACAACAACAACGACAACTCCAACAACAACTCCAACGACGAAGGCGTCTCCTTCTGTGTCTCGGATGAGTCGACGAGATTCGGACTGACGATGATGAGGTCCTCCGGTGGTGGTGGAGGCACGGGGAGCGGCGGCGGTGGCGGTGGCGTAAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTGAGATGCAGGACTTGTTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCTGCCGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGCAATTGCACAGTGCAGACACTTCTTCTAAACGACACAGAGACACTCATCCAGCTCTTGACACTCTTCCTTGCGCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAACTGGGTCAATTCCCTTCAGAAGTAAGCTCATCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACAGTGTAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATGTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGACTTTACACTACTGCCGTTGTTGCCGAGGGTTCTTCCGCTGGAGGAGGAGCTGAACCTCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCGCTGGGAACCCCTTTGACCCTTCTTCACTTTACCCGGCTCCCCTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAAGTCCTAA 1032 0.5203 MAGFFSLGGRGAGPHSNKEEEGERVAEKHHQDHHNSNSLFLFRNNEEVYNKGGFEIWPQPYHQNQGFSNYYSFGVGPSTHQPRRNHNNNDNSNNNSNDEGVSFCVSDESTRFGLTMMRSSGGGGGTGSGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQLHSADTSSKRHRDTHPALDTLPCAPPVPTITTTGLELGQFPSEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQGLYTTAVVAEGSSAGGGAEPQQQLSLITAATTTAGNPFDPSSLYPAPLNAFMAGTQFFPPPKS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy8g0092 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 341 IPR007818 GO:0003700|GO:0006355
Ahy8g0092 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 231 279 IPR006511 -
Ahy8g0092 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Ahy8g0092 343 Pfam Domain of unknown function (DUF702) 134 280 - -
Ahy8g0092 343 MobiDBLite consensus disorder prediction 72 101 - -
Ahy8g0092 343 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 341 - -
Ahy8g0092 343 MobiDBLite consensus disorder prediction 1 34 - -
Ahy8g0092 343 MobiDBLite consensus disorder prediction 178 217 - -
Ahy8g0092 343 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy8g0092 Ahy-Chr8 1559607 1562513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy8g0092 1 343 C2H2 Transcription Factor Family AT1G75520 45.263 1.25e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy8g0092 DUF702 1.70E-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g2324 17 112188418 112191351 Ahy8g0092 8 1559607 1562513 hybridization
Ahy16g0098 16 948048 950013 Ahy8g0092 8 1559607 1562513 PCT
Ahy6g1247 6 18606309 18608062 Ahy8g0092 8 1559607 1562513 PCT
Ahy8g0092 8 1559607 1562513 Ahy16g0098 16 948048 950013 PCT
Ahy8g0092 8 1559607 1562513 Ahy6g1247 6 18606309 18608062 PCT