LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy7g2191	ATGGCCAAAGAAGGTCTTGGACTTGAAATCACAGAGCTAAGATTGGGTCTTCCCGGTGGGGATTCATCAGCATCGAAGAAGAGGGTGTTTTCGGAGATTGATGGTGGGGAAAATGGATCCTCGACGGAGAGGAATAATAAGAACGCGGTGGTGGGGTGGCCACCGGTGTGCTCTTACCGGAAGAAGAAGACGTCGTCGAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTCTTGCGTAAAATTGATCTTGCCATGCACAAGGATTACTCCCACCTAGCCTTTGCCTTGGACAACCTCTTTGCTTCCTATGGAATCGATGCGGAGAATTGTGAACAAGTTCCGATTTACGAGGACAAAGATGGTGACTGGATGCTCGTCGGAGATGTTCCTTGGGAGATGTTTATTGAATCATGCAAGCGTCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGGTCTGCAACCAAAAGGATCATTAAAGGGATTTATAGAAGGCGTGAAAAATTGA	516	0.469	MAKEGLGLEITELRLGLPGGDSSASKKRVFSEIDGGENGSSTERNNKNAVVGWPPVCSYRKKKTSSKMYVKVSMDGAPFLRKIDLAMHKDYSHLAFALDNLFASYGIDAENCEQVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVKN*	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy7g2191	171	SUPERFAMILY	CAD & PB1 domains	59	147	-	-
	Ahy7g2191	171	Pfam	AUX/IAA family	63	154	IPR033389	-
	Ahy7g2191	171	ProSiteProfiles	PB1 domain profile.	67	150	IPR000270	GO:0005515
	Ahy7g2191	171	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	4	154	IPR003311	GO:0005634\|GO:0006355
	Ahy7g2191	171	Gene3D	-	61	159	-	-
	Ahy7g2191	171	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA6	4	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy7g2191	Ahy-Chr7	80265304	80268219	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy7g2191	60	152	B3 DNA Binding Superfamily	AT2G46530	32.258	6.32e-11	58.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Ahy7g2191		AUX_IAA	9.60E-18	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy7g2191	K14484		-	gmx:100811879	258.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy18g0119	18	851270	854185	Ahy7g2191	7	80265304	80268219	hybridization