Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1780 ATGGAGTTGTATGACCATGATTTCTTGGATGAGTTAATGTCACTAAGAAGAGAAACATGGGAAAGCACAAATAATAATCCATGTGATGAAGAAGGAAACTACCAATTACTCTTCCCAAATAATAATGGGTGGGGTAATAGTGGCGGTTTTGATCATCAAAATTATTACTCATCACCTTCTTCTATTCTTGTTCCAAACTCCTCTTATTCTTGTTCTTGTTCTTCTTACCAAGAAGTTCCTCAAAATTGCAACGATTATTATTGTGACACTACCTTCAATGAAATATATAGTTCCTTGCTTGAAGAATTCTCAGCACCACAGATCAATAATAGTGACACTACTACTCCACCACCAATATTAATGAGTGATCATCAAGAGGATTATAATAATAGTAATAATAATAATGAAAATCCACTATTAGTTTCTATGTTGGTGGAAGAAGAGCTTCAAAGCTTGGAGATGCAAAGAGAGTGCAAAATGGAGGCAAGTCAATCATCTTCTCCTCCTGTTTTCAACTCGGAAAGGAAGAACAATAATAGATCAAAGAAGGTTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACCATTGACTACATGAAGGAACTACTAGACAAGATCAATACTTTGAAACAAGAAATCCAAGTGGTGGATGATTCAAATGGCATTTTATCCAATGATATACACCCAAATGATATTTTAGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATAATAATGGAGACACAAGAGTTGAGATCTGTTGTGGTGGGAAGCCAGGGATGTTGCTATCTACAGTAAACACTTTGGAAGCATTGGGTCTTGACATTCAACACTGTGTTATAAGCTGTTTCAATGACTTCACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAGAAGAGAATGGTGAGTTCTGAAGATATAAAGCAAGCACTGTTTAAGACCGCAGGATATGGAGGGAGATGTTTCTGA 1077 0.377 MELYDHDFLDELMSLRRETWESTNNNPCDEEGNYQLLFPNNNGWGNSGGFDHQNYYSSPSSILVPNSSYSCSCSSYQEVPQNCNDYYCDTTFNEIYSSLLEEFSAPQINNSDTTTPPPILMSDHQEDYNNSNNNNENPLLVSMLVEEELQSLEMQRECKMEASQSSSPPVFNSERKNNNRSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKQEIQVVDDSNGILSNDIHPNDILVRNSPKFDVERRNNNGDTRVEICCGGKPGMLLSTVNTLEALGLDIQHCVISCFNDFTMQASCSEELEQKRMVSSEDIKQALFKTAGYGGRCF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1780 358 CDD ACT_UUR-ACR-like 284 325 - -
Ahy7g1780 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 249 IPR036638 GO:0046983
Ahy7g1780 358 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 357 - -
Ahy7g1780 358 Pfam Helix-loop-helix DNA-binding domain 192 235 IPR011598 GO:0046983
Ahy7g1780 358 Coils Coil 232 252 - -
Ahy7g1780 358 Gene3D - 174 253 IPR036638 GO:0046983
Ahy7g1780 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Ahy7g1780 358 MobiDBLite consensus disorder prediction 154 201 - -
Ahy7g1780 358 MobiDBLite consensus disorder prediction 157 175 - -
Ahy7g1780 358 PANTHER DNA BINDING PROTEIN 3 357 - -
Ahy7g1780 358 SMART finulus 192 241 IPR011598 GO:0046983
Ahy7g1780 358 MobiDBLite consensus disorder prediction 176 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1780 Ahy-Chr7 66166269 66169446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1780 115 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.510 5.07e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy7g1780 HLH 7.80E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1780 - - gmx:100814388 383.645