Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1755 ATGGGGAGAGGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGATCGATACAACAAAACCAAGGAAGAACTAGATCAGCTTGGGAGTTCAACCTCTGAAGTTAAGTTTTGGCAACGGGAGGCGGCAATGCTAAGGCAACAATTGCTAAGTTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTGTCAGGTTTGACAATCAAAGATTTACAGACTTTGGAGAACCAGTTGGAAATTAGCCTTCGCGGTGTCCGTACAAAAAAGGATCAGCTTTTAATGGATGAAATACAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGATCTATACGAGAAGATAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGGTATATGTAACAAAAGATCAGAATGTGGAGAATAGAAATTCTGTCCTCACAAACAGTCTAGCCATAAAAGACGATTCTCAAGTTCCTGTGTGTCTCCAACTAAGCCAGCCACAATAA 666 0.4174 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVVDRYNKTKEELDQLGSSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKINLIRQENMELKKKVYVTKDQNVENRNSVLTNSLAIKDDSQVPVCLQLSQPQ* 222
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1755 221 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Ahy7g1755 221 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Ahy7g1755 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Ahy7g1755 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 Coils Coil 163 183 - -
Ahy7g1755 221 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy7g1755 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy7g1755 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy7g1755 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 221 - -
Ahy7g1755 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Ahy7g1755 221 Coils Coil 86 106 - -
Ahy7g1755 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy7g1755 Ahy-Chr7 65288053 65297572 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1755 1 221 MADS-box Gene Family AT4G37940 61.712 1.86e-91 266
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy7g1755 K-box 7.20E-27 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3065 17 131936491 131967216 Ahy7g1755 7 65288053 65297572 hybridization