Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1754 ATGTCATCAGAAGAAGCAATGCAGTTGCGCATCGAAGACAATCATGTGGTTATGGACAATGGCATACTACAAGTTTATTTGTCGAAACCGAGTGGATTTGTCACCAGAATACAATATAATGGCATTGATAATCTGCTGGAAGCTGGAAATGAAAAATTCAACAGAGGGTATTGGGACGTTGTTTGGAGTAAAGAAGGAAGTACAGGAACTACCGGGACATTTGAGCGGATTGTAGGAACGAGTTTTAATGTTATAGTGGAAAATGAAGAACAAATTGAAATATCGTTCACAAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCTCTCAACATTGACAAAAGGTATGTGATGCTACGTGATTCCTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTCAACATCCCCCAAATCAGGATCGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCTCTTCCAGAGGACCGATCACCCGGAAGGGGAAAAGTACTCGTTCCCCCGGAAGCAGTTTTGCTTGCTGACCCTGTGGAGCCAGAGTTCAAGGGGGAGGTGGATGACAAGTACCAATACTCGTGCCAAAACAAAGATCTAAAGGTTCATGGGTGGATAAGTTCTAAATCGGAAAGTGATACAGGCACAGGATTTTGGGTAATCATACCTAGCAATGAGTTTCGTTCGGGTGGCCTCACGAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGTTTCTTAGCGCTCATTACGCAGGAGAGGATCTGGTCCTGAAACTCAGTCCAAACGAACCTTGGAAGAAAGTTTTTGGCCCCACTTTTATATATCTTAATGCTTTGTTGGATGGTGAAGACCCACTTGAGCTTTGGGAGGATGCCAAAGATCAGATGAATGAGGAAGTTGAAAACTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAATTTCTAGCGAAAGGGGCAGTGTAAGTGGCACGTTACTAGTTAGAGACAGGATGTTAAGTGACGATTTCATTGGAGCAAGAGGTGCATACGTAGGACTAGCACCACCTGGTGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGAGTATAGCAGATGATGATGGGTACTTCTCAATTGATAATATACGTAGTGGCGATTACAATATCTATGCATGGGTTCCAGGTTTCATTGGAGACTATCGGAGCAATTATCTCCTCACCATAACTCCAGGCTGTGACAAAAACATTAGTGACATTATTTTTGAGCCTCCAAGAGATGGTCCAACTTTATGGGAAATAGGAATTCCAGATCGTTCTGCTGCCGAGTTCTATGTTCCTGATCCCAATCCAAATTACATAAACAAGCTCTATATCGATCATCCAGATAAGTTTAGGCAATACGGCCTGTGGGAAAGATATTCAGAGTTATACCCAAGGGAAGATTTAATTTATACTGTTGGTGTCAGTGATTACAGCAAAGATTGGTTCTTTGCACATGTCACCAGGAAGAAAGATGATGGCACTTACCAAGGCACTACATGGCAAATTAAGTTCGATCTTGCTCATGTGGAGGCAGGTGGAACCTATAAGCTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAATGATGAAAAGCAAGATCCTCCACTATTTACAACCGGGGTTATTGGAAACGACAATGCAATAGCTAGACATGGAATTCATGGACTATACTGGCTATTCAACATTGATGTGCTTGCCCATCAATTATTGGAAGGAAACAATACCATTTATCTAACTCAGGCCATCGCTACAGGCCCCTTTCAGGGAATAATGTATGACTATATTCGTTTTGAGTGTCCCAATTCTTCTTCTGTAAAAGAAATTCAGGTTTAG 1950 0.4236 MSSEEAMQLRIEDNHVVMDNGILQVYLSKPSGFVTRIQYNGIDNLLEAGNEKFNRGYWDVVWSKEGSTGTTGTFERIVGTSFNVIVENEEQIEISFTRMWDPSMEGKLSPLNIDKRYVMLRDSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRSPGRGKVLVPPEAVLLADPVEPEFKGEVDDKYQYSCQNKDLKVHGWISSKSESDTGTGFWVIIPSNEFRSGGLTKQNLTSHVGPISLAMFLSAHYAGEDLVLKLSPNEPWKKVFGPTFIYLNALLDGEDPLELWEDAKDQMNEEVENWPYDFPASEDFQISSERGSVSGTLLVRDRMLSDDFIGARGAYVGLAPPGEAGSWQRECKGYQFWSIADDDGYFSIDNIRSGDYNIYAWVPGFIGDYRSNYLLTITPGCDKNISDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLYIDHPDKFRQYGLWERYSELYPREDLIYTVGVSDYSKDWFFAHVTRKKDDGTYQGTTWQIKFDLAHVEAGGTYKLRLALASANVSELQVRVNDEKQDPPLFTTGVIGNDNAIARHGIHGLYWLFNIDVLAHQLLEGNNTIYLTQAIATGPFQGIMYDYIRFECPNSSSVKEIQV* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1754 649 Pfam Rhamnogalacturonate lyase family 8 204 IPR010325 -
Ahy7g1754 649 PANTHER LG27/30-LIKE GENE 6 643 - -
Ahy7g1754 649 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ahy7g1754 649 Pfam Polysaccharide lyase family 4, domain II 361 434 IPR029413 -
Ahy7g1754 649 CDD RGL4_M 339 438 IPR029413 -
Ahy7g1754 649 Coils Coil 552 572 - -
Ahy7g1754 649 CDD RGL4_N 7 298 - -
Ahy7g1754 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 643 - -
Ahy7g1754 649 Gene3D - 6 276 IPR014718 GO:0030246
Ahy7g1754 649 SUPERFAMILY Galactose-binding domain-like 445 637 IPR008979 -
Ahy7g1754 649 Pfam Polysaccharide lyase family 4, domain III 448 635 IPR029411 -
Ahy7g1754 649 Gene3D - 446 636 - -
Ahy7g1754 649 CDD RGL4_C 450 637 - -
Ahy7g1754 649 Gene3D - 336 436 - -
Ahy7g1754 649 SUPERFAMILY Starch-binding domain-like 338 433 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1754 Ahy-Chr7 65197892 65227595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1754 7 640 Polysaccharide Lyase AT1G09890 64.882 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1754 K18195 - gmx:100815677 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g3061 17 131844186 131869609 Ahy7g1754 7 65197892 65227595 hybridization