Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1587 ATGTGCGGCGACGCAACCAACTGGGACGAAAATGCGTACAGGGAGCGCCTCCTCAAGGGGAGGGAGATCCAGACCCAAACCGTTTTCCGTACGGCTTGGGCTCCTAGTCCCCGAAACCCTAATCCTCACTCTCTCGTCGTTGCTTCCAGCGACGGTTCTATCGCCTCCTACTCCATCCCTTCCTGCATCTCCAACCTCAAAAATAATACCGATGCCAATGCGGCTAGATTATTGGCTGAACCAGATTGCTTCTTTCAAGGGCATGATGGACCTACATATGATGTCAAATTCTATGGTGATGGTGAAGATGCACTGTTGTTAAGTTGTGGAGATGATGGGTGGATTCGAGGATGGAGGTGGAAGGAACTTGCAAACTCAAATAGTGCTGTTTCTTCTCAAGGAAACAATATCAAACCCATACTTGACCTGGCAAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTGATTCTCAGGGGGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTTAAGGGGCACTTGGACTACTTGCACTGCATAGTTGCTCGCAACTCATCCAATCAGATTATAACTGGTTCAGAGGACAGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCAGTAGAAGATTTGAACTCAAAAGGATCTGTTTCATGGGTTGGCTGTGTTGCATTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCCCTTTGGAACCTTCCTGCTTCAGAGTGCTTATCAAGGATTTCAACTCGTGCTTCTGTACAGGACATGCTATTTGACAGCAACCAAATTTTGGCAGTTGGTGCAGATCCTCTACTGAATCGCTTTGACATGAATGGTGCAATCCTTTCGCAAATACAGTGTGCTCCTGCATCAGCTTTCTCTGTCTCCTTACATCCTGCAGGGGTTGTGGCAGTTGGAGGTTATGGATGTCTTGTAGATGTTATCTCACAATTTGGTAGCCATATGTGCACATTCCATTGCAAGTGCGAGGCTGTACCATTCTACGCGGACCAAAATGCCACAGATTTGTTGCTCCCAGCAAAAACATCTGAGATCCGAGGAGTTTGGGAAACCCTAACTCCGCTCGATCTTCTTCCACTGCAAACATCTTCGTCCTCTTCATCATCAACATCAATATCAACATCATCATCCGCAGTCATGGCAGGAGCTGCACCTGAGGGAACACAGTTCGATGCTCGTCAATTTGATGCAAAAATGAATGATTTACTCACAGCTGATGGACAGGACTTCTTCACATCTTATGATGAGGTGTACGATAGCTTTGATGCTATGGGTTTGCAAGAGAATCTCCTCAGAGGCATTTATGCCTATGGTTTTGAAAAGCCATCAGCTATTCAGCAAAGGGGAATAGTCCCATTTTGCAAGGGACTTGATGTTATTCAACAGGCCCAATCCGGAACTGGAAAAACTGCAACTTTCTGCTCTGGAATCCTGCAACAACTTGACTACAGCCTGACTGAATGTCAGGCCTTGGTTTTAGCGCCAACCCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCGCTTGGAGATTATCTAGGTGTGAAGGTTCATGCCTGTGTGGGAGGCACCAGTGTTCGTGAAGACCAACGCATTCTAGCCAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGACGTGTCTTTGATATGCTGCGCAGACAGTCACTTCAGCCGGATCACATTAAAATGTTTGTGTTGGATGAGGCCGATGAAATGCTTTCAAGGGGTTTTAAAGACCAGATCTACGATATATTCCAGTTGTTGCCATCGAAGATTCAGGTTGGAGTTTTCTCTGCCACAATGCCCCCTGAGGCCCTTGAAATTACTAGAAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGCGACGAGCTCACTTTGGAGGGTATAAAGCAGTTTTATGTCAATTGTGAGAGAGAGGAATGGAAGCTCGACACACTTTGTGATCTGTACGAGACATTAGCCATTACCCAGAGTGTCATTTTTGTCAACACCAGAAGGAAGGTAGATTGGTTGACGGACAAGATGCGAAGCCGAGACCACACGGTGTCAGCCACCCACGGAGACATGGACCAGAATACGAGGGACATCATTATGCGGGAGTTCCGTTCTGGGTCTTCCCGTGTTCTGATAACAACTGATCTTCTGGCACGTGGTATTGATGTTCAGCAAGTGTCTCTCGTAATAAACTATGATCTCCCTACACAGCCCGAGAACTATCTCCACCGTATTGGTCGTAGTGGTCGGTTTGGTAGAAAGGGTGTTGCCATCAACTTTGTCACGAAGGATGATGAAAGAATGCTGTTTGACATCCAGAAGTTTTATAATGTGCAAATCGAGGAGCTGCCTGCAAATGTTGCTGAACTCCTCTGA 2520 0.4635 MCGDATNWDENAYRERLLKGREIQTQTVFRTAWAPSPRNPNPHSLVVASSDGSIASYSIPSCISNLKNNTDANAARLLAEPDCFFQGHDGPTYDVKFYGDGEDALLLSCGDDGWIRGWRWKELANSNSAVSSQGNNIKPILDLANPQHKGPWGALSPIPENNAIAVDSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSNQIITGSEDRTARIWDCKSGKCIKVIDPVEDLNSKGSVSWVGCVALDASESWLACSSGRNISLWNLPASECLSRISTRASVQDMLFDSNQILAVGADPLLNRFDMNGAILSQIQCAPASAFSVSLHPAGVVAVGGYGCLVDVISQFGSHMCTFHCKCEAVPFYADQNATDLLLPAKTSEIRGVWETLTPLDLLPLQTSSSSSSSTSISTSSSAVMAGAAPEGTQFDARQFDAKMNDLLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNCEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVQIEELPANVAELL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1587 839 Pfam Helicase conserved C-terminal domain 692 800 IPR001650 -
Ahy7g1587 839 PANTHER RNA HELICASE 449 839 - -
Ahy7g1587 839 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 466 494 IPR014014 GO:0003724
Ahy7g1587 839 Pfam DEAD/DEAH box helicase 491 652 IPR011545 GO:0003676|GO:0005524
Ahy7g1587 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Ahy7g1587 839 Gene3D - 244 378 IPR015943 GO:0005515
Ahy7g1587 839 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 613 621 IPR000629 -
Ahy7g1587 839 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 497 667 IPR014001 -
Ahy7g1587 839 SMART ultradead3 485 682 IPR014001 -
Ahy7g1587 839 CDD DEADc_EIF4A 470 668 - -
Ahy7g1587 839 Gene3D - 456 674 IPR027417 -
Ahy7g1587 839 SMART helicmild6 719 800 IPR001650 -
Ahy7g1587 839 SUPERFAMILY WD40 repeat-like 39 358 IPR036322 GO:0005515
Ahy7g1587 839 CDD SF2_C_DEAD 679 809 - -
Ahy7g1587 839 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 449 839 - -
Ahy7g1587 839 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 678 839 IPR001650 -
Ahy7g1587 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 820 IPR027417 -
Ahy7g1587 839 Gene3D - 7 243 IPR015943 GO:0005515
Ahy7g1587 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 231 277 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 318 356 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 78 119 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 280 316 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 136 186 IPR001680 GO:0005515
Ahy7g1587 839 SMART WD40_4 189 228 IPR001680 GO:0005515
Ahy7g1587 839 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Ahy7g1587 839 Pfam WD domain, G-beta repeat 247 277 IPR001680 GO:0005515
Ahy7g1587 839 Gene3D - 675 839 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1587 Ahy-Chr7 54230903 54239992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1587 427 839 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1587 K03257 - jre:109009115 1360.9