Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1580 ATGGCTAAACCCAAGGCTCCACGCCGAACCCTAGACTCATACACAGTCAAACATATTAACAAAACCTTTAGAGCCGGGGATTGCGTGCTCATGCGACCCTCCGATCCGTCGAAACCGTCGTACGTGGCGAGGATCGAGCGGATCGAAGCTGACTCGCGAGGCGCCAACGTGAAGGTGCACGTGCGCTGGTACTACCGCCCGGAGGAGTCAATCGGCGGCCGCCGCCAGTTCCATGGCTCCAAGGAGGTCTTCCTCTCCGATCACTTCGACGTTCAGAGCGCCGACACCATCGAAGCCAAGTGTACGGTCCACAGCTTCAAGAGCTACACCAAGCTCGATGCTGTTGGAAACGACGATTTCTTCTGTCGTTTCGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGACAGAGTTGCTGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGGGCTGCAGTGATTGGTTTCACCCTGCTTGCATAGACATGACTGTGGAGGAAGCTAAGCGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAATTCTCACTCTACTTCAAGACACTCAGATACAAAGGTGGAGACTAAACGTCGGCGAAGGTCATAG 654 0.5245 MAKPKAPRRTLDSYTVKHINKTFRAGDCVLMRPSDPSKPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSTSRHSDTKVETKRRRRS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1580 217 SMART BAH_4 21 137 IPR001025 GO:0003682
Ahy7g1580 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Ahy7g1580 217 MobiDBLite consensus disorder prediction 192 217 - -
Ahy7g1580 217 Pfam BAH domain 22 136 IPR001025 GO:0003682
Ahy7g1580 217 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Ahy7g1580 217 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Ahy7g1580 217 SMART PHD_3 141 188 IPR001965 -
Ahy7g1580 217 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Ahy7g1580 217 Pfam PHD-finger 141 189 IPR019787 -
Ahy7g1580 217 Gene3D - 2 135 IPR043151 -
Ahy7g1580 217 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Ahy7g1580 217 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Ahy7g1580 217 PANTHER OS08G0421900 PROTEIN 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1580 Ahy-Chr7 53954606 53958316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1580 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 2.40e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy7g1580 BAH 4.30E-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1580 - - gmx:100787968 444.891