Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1570 ATGAGTCCATCTTTTGATGCTATTAGCAAGATAGTTCCTCCAAGAGAGGCTTGGAGGCTTAAAGTGAGGGTAATTAGGGCTTGGATTGTTCCAAGCTTTGGAAATCCAGATTCTCCAAATTCAATGGAGCTCATTTTGGTGGATGAAAATTCAAACAAAATCCAGGCCACTATAAGGAAGCAACTTATCAACAGGTTTAAAGATAATATTATTGAAGGGAATTGCTACAAGATGTGCTATTTCTCTGTTGTTCCAAATCATGGCTCTTATAGAGCTACAAAACATGAGTTTAAGCTTACCTTCCTCTTCCGAACAATAGTAACAACTTTACCAGATGATATCATACCAAGAGTCTGTTTTACTCTATATCCTTTTGAGGAGATATTGCAAATGAGTCAAGATCATGATTATTTAGTTGATGTTATTGGGTTGCTGACTTTAGTTGGAGAGGAAAAAAGTTATGATAAAGATGGAAAAACAATCAAGATGGTTGTTGTGGAGCTTTCTTCTCAAAAGATGGTGCTTAGGTGCGCCCTGTTTGGAGAATATGTGGATCAACTAAATCATTTTCTTTCTTCTGGTTATGTTGAACAACCAGTAGTGATTCTTCAACTTGCCAAAGTTAAGCTTTTTCGAGGGCAACCTGGGTTACAAAATGTCATGAAAGCAACAAAAATATATCTTAATCCTGACTTGGCAGCTGTTGTTGATTTCAGGAAGAGCGTGGTAGAACAAGGGATAAATGGGACCCAGCCACTGTTTATTGCTAATGAAGGAAAAACTATCTCATTGGAAGATGACTTCATGAGGTTGACTAAGAAATCTACAATAGATGAGTTGCAAGAAAACAAGGAGGATGGAACCTTTGTCATTTTAGGTACTATCACTGATGTTGTAGAAGAGGGGTGCTGGTGGTATTCTACCTGTGTTTGTGGGAAGACAGTACATCCTGAATCTGGTGTTTACTTTTGTGATATGTGCATGCATCATGTGACAAATGTGATCCCAAGGTATAGGCTCAAGGTAGTTGTATCAGATGAAACTGGACAGGGTATATTTGTCCTCTTTGATCGTGAAACAACCTATTTGGTTAAAAAAACATGTGGTGACCTATTTAATGAGGTACATAAAGATTCAAAGGTTCTCTGTGGGGATGACTACCCTATCATTTTTAGAAATTTGGAGGGTAAAAAAGTCTTGCTGAAAGTGGATACTAAGTCTCTTGGTGTTGATAGATATTTTGGAACTTTTCGTGTGAAGAGGATTTGTGATGATGCTGCAATTATTTCAATGTTTGAACTTGCTCAGACTGAGATAACACCTTTGAAGGATGCACCTGTTCCTGTGTTTGGTCCTGAGTTGGGTGAAACTTCTAATACAAAATGTTTAGAGAATACTGTCATGTCATCTTTTCTTCAAAAAGAAGCAAATGTTGCTGGACTTGATGATATACACTTAGATATGGAAGGTGTTAAGGAGGTTGATATTCAAGATCATTCTGTTGATAGTGATGAAAATGTAGTGCTGTCGGATGATATTGGCTCACTTATTCGGTCTGATGTTGATGAAACTCAGGATTTGCTCTCACACCTTTTAGATGACTCAAGGAAAGTTAATGTGCCTAATGTTGTTCCCAAAGATGCAGTATTTTTAAAGGTGAAGAGGAATCTTGAGGCTGATTTTGATAAGGAACTTGAGGATACTGTTGCTCATTGCTCTAAAATAATCAAGATTGAAGATAGTTAA 1746 0.3729 MSPSFDAISKIVPPREAWRLKVRVIRAWIVPSFGNPDSPNSMELILVDENSNKIQATIRKQLINRFKDNIIEGNCYKMCYFSVVPNHGSYRATKHEFKLTFLFRTIVTTLPDDIIPRVCFTLYPFEEILQMSQDHDYLVDVIGLLTLVGEEKSYDKDGKTIKMVVVELSSQKMVLRCALFGEYVDQLNHFLSSGYVEQPVVILQLAKVKLFRGQPGLQNVMKATKIYLNPDLAAVVDFRKSVVEQGINGTQPLFIANEGKTISLEDDFMRLTKKSTIDELQENKEDGTFVILGTITDVVEEGCWWYSTCVCGKTVHPESGVYFCDMCMHHVTNVIPRYRLKVVVSDETGQGIFVLFDRETTYLVKKTCGDLFNEVHKDSKVLCGDDYPIIFRNLEGKKVLLKVDTKSLGVDRYFGTFRVKRICDDAAIISMFELAQTEITPLKDAPVPVFGPELGETSNTKCLENTVMSSFLQKEANVAGLDDIHLDMEGVKEVDIQDHSVDSDENVVLSDDIGSLIRSDVDETQDLLSHLLDDSRKVNVPNVVPKDAVFLKVKRNLEADFDKELEDTVAHCSKIIKIEDS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1570 581 SUPERFAMILY Nucleic acid-binding proteins 275 436 IPR012340 -
Ahy7g1570 581 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy7g1570 581 CDD RPA1_DBD_A_like 19 107 - -
Ahy7g1570 581 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Ahy7g1570 581 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Ahy7g1570 581 Gene3D - 114 250 IPR012340 -
Ahy7g1570 581 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Ahy7g1570 581 Gene3D - 6 112 IPR012340 -
Ahy7g1570 581 Gene3D - 264 437 IPR012340 -
Ahy7g1570 581 Pfam Replication factor-A C terminal domain 291 406 IPR013955 -
Ahy7g1570 581 CDD RPA1_DBD_C 274 420 IPR013955 -
Ahy7g1570 581 CDD RPA1_DBD_B_like 140 242 - -
Ahy7g1570 581 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1570 Ahy-Chr7 53268622 53272202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1570 13 371 Core DNA Replication Machinery Family AT5G08020 22.995 1.98e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1570 - - ahf:112791275 1060.83