Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1287 ATGGGTTATTTATGTGACTTTTGTGGAGAGCAAAGGTCCTTGGTATACTGCCGCTCAGATGCTGCATCCTTATGTTTGTCGTGCGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGCCATTCCAGGACCCTTGTATGTGAGAGATGTAACTCACAACCTGCTTTTATAAGATGTGCTGAGGAGAAAATTTCACTCTGTCAGAACTGTGACTGGCTTGGTCATGGTACCACTCCGTCTACTTCGGGGCATAAGAGGCAAACAATCAATTTATATTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTCAGATATACCTGCCATGGGTGAAACATGTGAGCAGGAACTTGGTTTAATGAGCATTAGTGAGAACAGTGAAAAGAGTGCTTGGGTTCCTCCAGAAAACCAGAATGCTTCTAGTTCTGCTCAAGTGACCAATCTACCCGGCAAGGATAAATCTTGGGTTGGCACATCTTCAATGCCTGAGTCAAGCTCAGAACCTCGTATCATGGACCAGCCACCTGGACCTTCCAATGCATGCGTGCCTAAGTTATATTGTCCTGTGAAAACAACTCCTGCACTCTGTGAAGATGATGATAATCTATATGATGATTTCAACATGGATGAAGTGGATCTGGATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGGACAAAGGAAATGTCTGCCAGTGCTGGGGACTCCAATTGTCAGGGCGCGGTTGCTGCTGAGGGCTCAACTGGATTAATCAATGCAACACAACCAGCATGCAGCAATGCTGCATCTGCAGATTCGATGATGAGCACTAAAACTGAACCAATTATTTGTTTTACTGGAAGGCAATCCCAATCGAACATTTCTTTTTCTGGTGCAACTAAAGATGGTGGTGGTGGTGGTGGTGGTGGTGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAGCTCTATGCAATCTGCTAATCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAAAAGACACGAAAGTTTGAAAAGCGAGTAAGGTATGCCTCTCGTAAGGCTAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATATCTATGACTACGACCCGATGAGCCAAACCAGAAGTTACTGA 1251 0.4556 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCERCNSQPAFIRCAEEKISLCQNCDWLGHGTTPSTSGHKRQTINLYSGCPSAAEFSSIWSFFSDIPAMGETCEQELGLMSISENSEKSAWVPPENQNASSSAQVTNLPGKDKSWVGTSSMPESSSEPRIMDQPPGPSNACVPKLYCPVKTTPALCEDDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKEMSASAGDSNCQGAVAAEGSTGLINATQPACSNAASADSMMSTKTEPIICFTGRQSQSNISFSGATKDGGGGGGGGDYQDCGASSMLLMGEPPWCPPCPESSMQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDIYDYDPMSQTRSY* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1287 416 CDD Bbox1_BBX-like 4 47 - -
Ahy7g1287 416 SMART bboxneu5 48 90 IPR000315 GO:0008270
Ahy7g1287 416 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ahy7g1287 416 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 416 - -
Ahy7g1287 416 MobiDBLite consensus disorder prediction 134 181 - -
Ahy7g1287 416 Pfam CCT motif 359 401 IPR010402 GO:0005515
Ahy7g1287 416 CDD Bbox1_BBX-like 47 90 - -
Ahy7g1287 416 ProSiteProfiles CCT domain profile. 359 401 IPR010402 GO:0005515
Ahy7g1287 416 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Ahy7g1287 416 MobiDBLite consensus disorder prediction 134 173 - -
Ahy7g1287 416 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ahy7g1287 416 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1287 Ahy-Chr7 25828631 25834073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1287 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 55.869 1.56e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy7g1287 CCT 6.70E-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1287 - - gmx:100783016 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1534 17 30991982 30997379 Ahy7g1287 7 25828631 25834073 hybridization