Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1078 ATGGCACTTTCTACTACTACACTTCTAGTTGCTCTCTTTGTTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTGGTTGGCAGGGTGCACATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACGAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAGCCTGGCTCCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAACAACAATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATTAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCAGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGCCTGGCAAACAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAACGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAAACTTTCCAAGGTGTTCAGTTTTAA 765 0.4549 MALSTTTLLVALFVLLIGINLQGAIADYGGGWQGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCIKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTAWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPANWQFGQTFQGVQF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1078 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ahy7g1078 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Ahy7g1078 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Ahy7g1078 254 PANTHER EXPANSIN 7 254 - -
Ahy7g1078 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Ahy7g1078 254 Gene3D - 162 254 IPR036749 -
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ahy7g1078 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ahy7g1078 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Ahy7g1078 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Ahy7g1078 254 Gene3D - 20 157 IPR036908 -
Ahy7g1078 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Ahy7g1078 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Ahy7g1078 254 SMART dpbb_1 67 152 IPR007112 -
Ahy7g1078 254 PANTHER EXPANSIN-A15 7 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1078 Ahy-Chr7 16827549 16829952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1078 8 254 Expansin Gene Family AT2G40610 78.629 1.81e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1078 - K20628 gmx:100777044 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g1314 17 21464040 21466556 Ahy7g1078 7 16827549 16829952 hybridization
Ahy17g1314 17 21464040 21466556 Ahy7g1078 7 16827549 16829952 PCT
Ahy7g1078 7 16827549 16829952 Ahy17g1314 17 21464040 21466556 PCT
Ahy7g1078 7 16827549 16829952 Ahy7g1078 7 16827549 16829952 PCT