Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g1077 ATGGCTAGATCCAAAGTGAAGCTTGCATACATAACCAACGATGCTGCAAGGAGGGTTACATACAAGAAGAGGAAAAGAGGGATGATGAAGAAAATTAGTGAACTAAGCACCCTTTGTGGGGTTGATGCCTGTGCCATAGTCTACAATTCACGTCAAGATGCTCATCCTCTTGACGAGCCCGAAGTTTGGCCCTCCCGCATGGGAGTTGAAAGGGTGATTGAGAAATTCCGGCAATTGCCGGAAATTGATCAAAACAGGAAGAGGATGGATCATGCGGATTACTTGACTCTGAGGATCGCGAAAGAGAAGGAGAAACTGAAGAAGAAAAGGCATGACAACAACGAGAAGGAGTTCCAGCTTCGCATGCATGATTTCATGCTAAGAAATAGGCTTCCAGAGAATCTGAGCTTCTTTGATTTGAATAACTTGGCTTATCATACTGACATGAAGCTTAGGGAGGTCGACATGCGGTTGCAGATGCTTCTGGAAAAAGAGAACAAGGAGATGATGATGGATTTCGCACCGTCGTCACAGCCGATTCATGGTCCTTATCATCCCCTTGAGAGTGGAGAGTCTAGTGGGAAGAACATGAACCATTTTTCATTTATGGAGGAAAACAACCACAACAACTACAATAGTGGTTTTGACATGATTCTTGGAAATGCAAGAATTAACTAA 678 0.4366 MARSKVKLAYITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQDAHPLDEPEVWPSRMGVERVIEKFRQLPEIDQNRKRMDHADYLTLRIAKEKEKLKKKRHDNNEKEFQLRMHDFMLRNRLPENLSFFDLNNLAYHTDMKLREVDMRLQMLLEKENKEMMMDFAPSSQPIHGPYHPLESGESSGKNMNHFSFMEENNHNNYNSGFDMILGNARIN* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g1077 225 SUPERFAMILY SRF-like 3 98 IPR036879 GO:0003677|GO:0046983
Ahy7g1077 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 202 - -
Ahy7g1077 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Ahy7g1077 225 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy7g1077 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy7g1077 225 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g1077 Ahy-Chr7 16804411 16805730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g1077 1 161 Type I MADS-box Gene Family AT5G48670 47.531 3.38e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy7g1077 SRF-TF 3.80E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g1077 - - aip:107606857 409.838