Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g0601 ATGCCAGAAAACAGGCAGGTTCTGAGGAATGCTGCTTCTAATCAATCCGGTGACAACATTGAAGAAGCAATTCGGCGATTGAAAATCAATGACAATCGAGATAGAGATACTGCGGGTCAAACTAGCCCGTATCCGGATCGTCCTGGTGAACCTGATTGCTTATATTTTCTGAGGACTGGAATGTGTGGTTATGGGACTAACTGTCGCTACAATCACCCCGCTAATGTTTCACTGGGTACTCATTATGGTGAAGAGCTCCCTGAGAGAAACGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGTAAGTATGGATCATCGTGTAAATATCATCATCCACGGGACAGACGAGGTGCTGCTCCTGTATCATTCAATGCTTTAGGCCTTCCAATGCGTCAGGTCCGAAGAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGAGTAGCTTGCAAGTTTCATCATCCGCCGCATGCTACTTTTGGAGCTTCTGGAGTGGCTGCATCTCCTACCTCAATGATCCCCGCATCTGGATATGTTGGTGGATATCCGTATTCCTTACCGAGAATGCCATATTTATCTGGACAGGGCCTTCAGTCTTATGTGCCTCCTTTCTTTTCTTCTCCACAAGGAATTATACCCGGACAGGGTTGGAACAGCTACATGGGAAGTATGAACCCTGCAATGTCTACTGGTTTTCTTGGATCTAATCTTGTTTACGACTCTGTGAATCCGGGTGAGTCACTTTCTGGTGGGCAGGTAGTAAGTCTTAATCTCCCAGATAGGCCTGATCAGCCAGAATGCAGATACTATATGAACACAGGGACTTGCAAGTATGGATCTGATTGTAAGTTCCACCACCCGAAAGAAAGAATCGCCCAGTCATTCATAAATCCACTCGGCCTTCCTGTGCGACCTGGGCAAGCTATATGTTCTTATTATAGAATTTATGGAATATGCAAGTATGGCCCAACATGCAAATTTGATCATCCAGTTTTGGCAATCTCACAGAACTATCGCTTGGCCACACCTACTGCTTTATCTGCACTGGACACCCCTCTCGACGGCAATCGAAGAGGGACTTTCCAACCACCCGAGACATCACCATCTAAATTATCGAGTGATGAGCATCAGCATTCGGATAATAATATCAATAATTCACAGGCCGCTGAAGATTCATCCAAACAAGCTGATCATACTACCTCAAATTCCTTTGAAGTGGCCTCGGAATCCTCCTTACATGACCAAGATGCTTGA 1272 0.4513 MPENRQVLRNAASNQSGDNIEEAIRRLKINDNRDRDTAGQTSPYPDRPGEPDCLYFLRTGMCGYGTNCRYNHPANVSLGTHYGEELPERNGQPDCEYFLKTGTCKYGSSCKYHHPRDRRGAAPVSFNALGLPMRQVRRKSCPYYMRTGSCKFGVACKFHHPPHATFGASGVAASPTSMIPASGYVGGYPYSLPRMPYLSGQGLQSYVPPFFSSPQGIIPGQGWNSYMGSMNPAMSTGFLGSNLVYDSVNPGESLSGGQVVSLNLPDRPDQPECRYYMNTGTCKYGSDCKFHHPKERIAQSFINPLGLPVRPGQAICSYYRIYGICKYGPTCKFDHPVLAISQNYRLATPTALSALDTPLDGNRRGTFQPPETSPSKLSSDEHQHSDNNINNSQAAEDSSKQADHTTSNSFEVASESSLHDQDA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g0601 423 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Ahy7g0601 423 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Ahy7g0601 423 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Ahy7g0601 423 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Ahy7g0601 423 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Ahy7g0601 423 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Ahy7g0601 423 MobiDBLite consensus disorder prediction 384 416 - -
Ahy7g0601 423 MobiDBLite consensus disorder prediction 1 20 - -
Ahy7g0601 423 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Ahy7g0601 423 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 399 - -
Ahy7g0601 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 294 IPR000571 GO:0046872
Ahy7g0601 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Ahy7g0601 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Ahy7g0601 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 336 IPR000571 GO:0046872
Ahy7g0601 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Ahy7g0601 423 MobiDBLite consensus disorder prediction 355 423 - -
Ahy7g0601 423 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Ahy7g0601 423 SUPERFAMILY CCCH zinc finger 308 336 IPR036855 GO:0046872
Ahy7g0601 423 MobiDBLite consensus disorder prediction 28 47 - -
Ahy7g0601 423 Gene3D - 87 171 - -
Ahy7g0601 423 Gene3D - 19 83 - -
Ahy7g0601 423 SUPERFAMILY CCCH zinc finger 271 296 IPR036855 GO:0046872
Ahy7g0601 423 Gene3D - 267 351 - -
Ahy7g0601 423 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Ahy7g0601 423 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Ahy7g0601 423 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Ahy7g0601 423 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Ahy7g0601 423 SUPERFAMILY CCCH zinc finger 135 163 IPR036855 GO:0046872
Ahy7g0601 423 PANTHER PROTEIN PHOSPHATASE RELATED 4 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g0601 Ahy-Chr7 6424938 6429025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g0601 1 414 C3H Transcription Factor Family AT1G04990 45.921 5.52e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy7g0601 zf-CCCH 4.90E-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g0601 - - vra:106765262 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0761 17 8390010 8394346 Ahy7g0601 7 6424938 6429025 hybridization