Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy7g0340 ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCATCAAAAGAAGATGGGGAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTCGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGGAGGAATCATCATGGTTGCGGTTAGGGTTTATGGGCAATTATCAATGCCCATACCTCACTGTCTCCGCATAAGAAATTTCAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCGTCCAAACTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCCCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGCAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAGCAGCAGAATTTGATGCATGGGAATATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAGTAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA 849 0.4452 MELPNQAPEEGSSQHHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSGGIIMVAVRVYGQLSMPIPHCLRIRNFSVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLQKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPVNLLDSNNHQYSRQDHTALQLV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy7g0340 282 Pfam K-box region 132 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy7g0340 282 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 ProSiteProfiles K-box domain profile. 134 224 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy7g0340 282 Gene3D - 32 158 IPR036879 GO:0003677|GO:0046983
Ahy7g0340 282 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 16 80 - -
Ahy7g0340 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 80 - -
Ahy7g0340 282 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 MobiDBLite consensus disorder prediction 12 27 - -
Ahy7g0340 282 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 105 273 - -
Ahy7g0340 282 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 MobiDBLite consensus disorder prediction 1 27 - -
Ahy7g0340 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Ahy7g0340 282 Coils Coil 207 236 - -
Ahy7g0340 282 CDD MADS_MEF2_like 21 125 IPR033896 GO:0000977|GO:0045944
Ahy7g0340 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 105 273 - -
Ahy7g0340 282 SUPERFAMILY SRF-like 21 83 IPR036879 GO:0003677|GO:0046983
Ahy7g0340 282 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy7g0340 Ahy-Chr7 2772391 2778848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy7g0340 9 282 MADS-box Gene Family AT3G58780 61.786 8.84e-109 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy7g0340 K-box 4.10E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy7g0340 K09264 - gmx:100792224 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy17g0485 17 4683982 4688911 Ahy7g0340 7 2772391 2778848 hybridization
Ahy17g0485 17 4683982 4688911 Ahy7g0340 7 2772391 2778848 PCT
Ahy7g0340 7 2772391 2778848 Ahy17g0485 17 4683982 4688911 PCT
Ahy7g0340 7 2772391 2778848 Ahy7g0340 7 2772391 2778848 PCT