Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2710 ATGGAATTTCTAGGAGCATTCCCTAATAATATAGAATTGGATTGCTTCAAAATGTTTTCTACTGAAAAAGAGCATGATTTCACTTACACTACTACTACTACTTCACAATTATTTCTAGATCAAAGTTCATCACTTTTAGGAGAAGATGATGAATTGAATTTTGGATTAGTACAATCCACACTTTCCTCCAATCTTATTAGTGATGAAAATGAGCATTATTTGTTTCATTCTTTAGATGCTAATCCCAACACAAAAATGTTGCATTATAAGTCACAAGAAGAGAGTAGTTACAATAGCGGCGGTTTCAGTGGTGGTGACACTACTTTCTTCAATGCCAACATGGATCTTACAACAAACTACTACTATTCTAGTAATTACCATGATCTTGTGCTAGCAAATGATGTTTCAATGGAAGACAATGTCAAGTTCAATGAGAATAATGTGGGAAGTGATGATGATCATAGATTATTGGAGAATTATGATCATTATCAATGTCATCAAATGGAACATGTTGATGTTGTTCCAAACAATAAGCAGTTGCAGCTCAAGAAGAAGATTGTTGAAGTACCAGAATTTGATGTGTCTGCTGAAAACAATACAAGTAACGGATCTAAGAATCAAAAGAAAAAACATTTCGTCGCGAAAGATGAGCAAGATTGCATGAAAAATGAAAGGTCTAGGAAGAGAAAAGTTGTTAGAAATGGGAATGAAGGAGAAGAGAGAAATAATAATGTAGGGTTAGATGGACAGAGCTCAAGTAGTAACATTAACATATGTGAGGATGACAATGCTTCTGAAGAAAACAATGGAGGGGTAACTTCGGTATCTCACTCAAATGGGAAAACAAGAACCATTAGAGGAACAGCAGCAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAGAGGATAAATGCGCGATTAAGAATTTTGCAGAGTCTTGTTCCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGACTCAAACTCAATAACCTCAAGAATTTTTCATCATCACCATGA 1131 0.3537 MEFLGAFPNNIELDCFKMFSTEKEHDFTYTTTTTSQLFLDQSSSLLGEDDELNFGLVQSTLSSNLISDENEHYLFHSLDANPNTKMLHYKSQEESSYNSGGFSGGDTTFFNANMDLTTNYYYSSNYHDLVLANDVSMEDNVKFNENNVGSDDDHRLLENYDHYQCHQMEHVDVVPNNKQLQLKKKIVEVPEFDVSAENNTSNGSKNQKKKHFVAKDEQDCMKNERSRKRKVVRNGNEGEERNNNVGLDGQSSSSNINICEDDNASEENNGGVTSVSHSNGKTRTIRGTAADPQSLYARKRRERINARLRILQSLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNLKNFSSSP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2710 376 Pfam Helix-loop-helix DNA-binding domain 298 338 IPR011598 GO:0046983
Ahy6g2710 376 MobiDBLite consensus disorder prediction 196 294 - -
Ahy6g2710 376 SMART finulus 294 343 IPR011598 GO:0046983
Ahy6g2710 376 MobiDBLite consensus disorder prediction 209 237 - -
Ahy6g2710 376 MobiDBLite consensus disorder prediction 238 289 - -
Ahy6g2710 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Ahy6g2710 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 352 IPR036638 GO:0046983
Ahy6g2710 376 CDD bHLH_AtIND_like 289 351 - -
Ahy6g2710 376 Gene3D - 288 345 IPR036638 GO:0046983
Ahy6g2710 376 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 369 - -
Ahy6g2710 376 PANTHER TRANSCRIPTION FACTOR BHLH54 6 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2710 Ahy-Chr6 112661277 112663337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2710 239 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 64.444 6.44e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy6g2710 HLH 2.30E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2710 - - aip:107648570 619.002