Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2683 ATGAGTAAGCTTCAGAGTGATGCACTGAGAGAAGCAATCATTGGGATAGTGGCTGATTCCAAAGAGAAGAATAGGAAGTTTATGGAGACCATTGAGCTCCAAATTGGACTCAAAAAATATGACCCACAAAAGGATAAGCGTTTCAGCGGTTCTGTAAAGTTGCCACACATCCCAAGGCCCAAGATGAAAATCTACATGCTTGGTGATGCTCAGCATGCTGAAGAGGTAAAGAAAATAGGATTGGATTGGATGGATGTTGAAGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGTCTCAATAAGGCAGGAAAGTTCCCCACACTTGTTACCCACCAAGAATCCCTCGAGTCTAAAGTCAATGAGACCAAGGCTATGGTGAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTAAGCATGGAGGAAAAGCAAATCTTCCAAAACGTACAACTGAGCGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCCTACCGTGTGTTTTGA 651 0.4209 MSKLQSDALREAIIGIVADSKEKNRKFMETIELQIGLKKYDPQKDKRFSGSVKLPHIPRPKMKIYMLGDAQHAEEVKKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2683 216 CDD Ribosomal_L1 9 215 IPR028364 -
Ahy6g2683 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Ahy6g2683 216 Gene3D - 20 211 - -
Ahy6g2683 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Ahy6g2683 216 SUPERFAMILY Ribosomal protein L1 22 216 IPR023674 -
Ahy6g2683 216 Gene3D - 65 154 IPR016095 -
Ahy6g2683 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Ahy6g2683 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
Ahy6g2683 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 2 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2683 Ahy-Chr6 112327728 112330642 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2683 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 86.111 1.54e-123 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2683 K02865 - gmx:100808580 386.726