Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2624 ATGGAGAATGATTTCTACAGTTCTTCACTGAACATGGAGCATAATCCTACACCAAAGCCACTTCTTCAGTGCTATTCATTTGATCTTAATAACCAAAACAACATCATAAATGGAATTCCAATGCTTGATTTAGACCAAGGAAGTGTTGATGGTAATAGCTTCATAAATTCTTCAAGTATTCTTAATTCTAATTCATTCGTTACTTCATCACAAGGAAAGACTACAGTAGGAGATACCTCAAATGCGACCGGAAATGGCGAGTTTCATGAGAATTTAGCCGGAGGAACGCAGCCGAACGGCGCGCTGGCTTCTCCGCTCACAACCATTCTTGCTGCTAGAATTGGCCTTCAAGAAAATCTAGAGAATTCAGCAACTTTGTTGCCTTCATTTGAGGCACTAGGACAATATGTCTTCAATAATTGGCATGATACTACTTCAAATTCAAGCCCTTTTCCGGCGACTTTCTATGGCGATCGTGGCTACGATGAAGTCCCTAGTAATGGTAAGTGGAGCTTTAACAAGTTTCCAAAAGCACCAGAGGTTGAAGGAAGTGGATTGGTACCATATGCATCCATAGGGAATCTTGATCCTAATGGATGGACATCATTGAATGCTGCAAATTTGGCTAATCATGCTTACAATTCTTCGAGTTATAGCAACGAGCTATCGTTAAGTCTTGCTACTTCGCCGGCTGCAGCTCAGTGCTCGGAGATTAGCTGCTCCGATGTGAGCTGTGGCATGAATGAAACAAGGACAGGATTGGAGAAAGGTTCTTGCAGCAGTAGGGAACTGTCTATGAGTTTAGGTTCTGAAAAACATGTCCGGTTTTCGCCGGTGATACTTGGATCAAAGTACCTTGTAGGAATTCAAGAGGTACTGGCTCAAATTGCAGCATATTCAATTGAGAATGTAGAAGAGGTGAATTATTTAGGTGCTGGTGATAGAGCTGGAGGAAATAAATCAACATCAGGTTTTGCACAAAAGACTACACCAGCAACAAATTCAAATGCAAATTCTTCTATGTTTGAAGCTCATGCAGAGTCTCCATTGCAAAGACATGCAGCTGAATCAAACAAATCCCAGTTGCTGACACTTTTACAGCTGGTGGACAGCCGATACAGTCAGTGTTTGGATGAGATACACACTGTTGTATCGGCATTCCACGCAGCAACAGAGCTCGATCCGTGCATACACGCACACTTTGCGCTCCAAACAATTTCTGTACTATACAAGGACTTGAGGGAGAGGATCAGCAATCATATTCTTGCAACAGGGTCCAATTTTGGCGACTCGTGCTCGGAAGATAAGGAATGGTCAGTTGATACTTCATTCATTCAAAAGCAATGGGCTATCCAGCAGTTGAAAAGAAAAGATCAGCTCTGGAGGCCTCAAAGGGGATTGCCTGAAAAATCTGTCTCAGTTCTTCGTGCTTGGATGTTCCAGAACTTCCTCCATCCGTATCCTAGAGATGCAGAAAAGCATTTACTTGCTGTAAAAAGTGGATTAACTAGAAGTCAGGTATCTAACTGGTTCATAAATGCTCGTGTTCGGTTATGGAAACCTATGATTGAGGAAATGTATGCCGAAATGAATAGAAGAAAGGCTTGTCGAATCGAAGAAGGGATGGAAGATGGCCATAGAAGCAGGCTAAGCATGAACAATCATTACTTTAATATGAATTGA 1683 0.4201 MENDFYSSSLNMEHNPTPKPLLQCYSFDLNNQNNIINGIPMLDLDQGSVDGNSFINSSSILNSNSFVTSSQGKTTVGDTSNATGNGEFHENLAGGTQPNGALASPLTTILAARIGLQENLENSATLLPSFEALGQYVFNNWHDTTSNSSPFPATFYGDRGYDEVPSNGKWSFNKFPKAPEVEGSGLVPYASIGNLDPNGWTSLNAANLANHAYNSSSYSNELSLSLATSPAAAQCSEISCSDVSCGMNETRTGLEKGSCSSRELSMSLGSEKHVRFSPVILGSKYLVGIQEVLAQIAAYSIENVEEVNYLGAGDRAGGNKSTSGFAQKTTPATNSNANSSMFEAHAESPLQRHAAESNKSQLLTLLQLVDSRYSQCLDEIHTVVSAFHAATELDPCIHAHFALQTISVLYKDLRERISNHILATGSNFGDSCSEDKEWSVDTSFIQKQWAIQQLKRKDQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPRDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRIEEGMEDGHRSRLSMNNHYFNMN* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2624 560 PANTHER HOMEOBOX PROTEIN ATH1 17 556 - -
Ahy6g2624 560 ProSiteProfiles 'Homeobox' domain profile. 458 521 IPR001356 GO:0003677
Ahy6g2624 560 Gene3D - 464 542 - -
Ahy6g2624 560 SMART prehox3 274 419 IPR006563 -
Ahy6g2624 560 SMART HOX_1 461 525 IPR001356 GO:0003677
Ahy6g2624 560 SUPERFAMILY Homeodomain-like 462 530 IPR009057 -
Ahy6g2624 560 MobiDBLite consensus disorder prediction 320 337 - -
Ahy6g2624 560 CDD homeodomain 461 522 IPR001356 GO:0003677
Ahy6g2624 560 Pfam Homeobox KN domain 478 517 IPR008422 GO:0003677|GO:0006355
Ahy6g2624 560 Pfam Associated with HOX 279 418 IPR006563 -
Ahy6g2624 560 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 556 - -
Ahy6g2624 560 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2624 Ahy-Chr6 111517244 111521413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2624 215 534 Homeobox Transcription Factor Family AT4G32980 56.037 3.04e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ahy6g2624 POX 5.90E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2624 - - aip:107605517 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3332 16 150291120 150295284 Ahy6g2624 6 111517244 111521413 hybridization
Ahy6g2624 6 111517244 111521413 Ahy10g1737 10 98547551 98552795 PCT
Ahy10g1737 10 98547551 98552795 Ahy6g2624 6 111517244 111521413 PCT