Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2482 ATGGAAACACTACTTCCTACCAATAAGAAACACTTCTTCTCTACACCTCCAACTCCATGTACACCTCAACACAAGAATCAACAATCTTTGCAAGACGAAGAAGCAGAAGAAAAAAAGGGTACAAACATAGATAATAATAACAATAATGCTTTCTTATTATTGGATTTGAATGTCTCCGGCAACCAAGACGATCTGAACGACGGATCGCCCGAGCTCAACCTCATAACTTGCTTGGATATGGATTCATTATCCAATCACAAAAATAATTCTCCATCAGAAGAAGACAAACCGAATTGTCTTGGTGACGGTTCATCTTCTTCCGACGTAGAAATGAGGGTTTTTTCTTGCAATTACTGCCAGAGAAAATTTTACAGTTCGCAAGCACTTGGCGGACACCAAAACGCTCACAAAAGGGAGCGATCAATAGCTAAGAGAGGCCACAGATTCGGGACGCAAATACTCTCCTCTACACCAGCCTTTGGAATGATTCCACTTCGCTACGCCGCCGCCAGCATAGCGTCTCTGCCGCTCCACGGCGGCGCGTGTGGCAACAGAGGACTCGGAATTCAAGCTCATGCAATGATCCATAAACCTTCACACAATGGACACCATCACGGTTGGTCAAGACCCCTTATTGATCCACAACCCGGTGTTGCAAAACTGGCTATGGCGGATTTTCATCGAACTTCGGCATTATCGGCGTCAAGAGGAAGCGTCGGAAGATTTGAAGTGGCGAACACTGTGATGAATTCAGCATCGCCAAATAAAGAAATCAGTGAGTTTTTTCTTAGTAGTGGAACTCATCGTCATCATCAAGATGAAATCAAGCATCTTGATTTGTCTCTCAAGCTTTAA 855 0.4398 METLLPTNKKHFFSTPPTPCTPQHKNQQSLQDEEAEEKKGTNIDNNNNNAFLLLDLNVSGNQDDLNDGSPELNLITCLDMDSLSNHKNNSPSEEDKPNCLGDGSSSSDVEMRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQILSSTPAFGMIPLRYAAASIASLPLHGGACGNRGLGIQAHAMIHKPSHNGHHHGWSRPLIDPQPGVAKLAMADFHRTSALSASRGSVGRFEVANTVMNSASPNKEISEFFLSSGTHRHHQDEIKHLDLSLKL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2482 284 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 284 - -
Ahy6g2482 284 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Ahy6g2482 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Ahy6g2482 284 MobiDBLite consensus disorder prediction 85 104 - -
Ahy6g2482 284 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 284 IPR044246 GO:0009788
Ahy6g2482 284 Gene3D Classic Zinc Finger 92 159 - -
Ahy6g2482 284 SUPERFAMILY beta-beta-alpha zinc fingers 112 141 IPR036236 -
Ahy6g2482 284 MobiDBLite consensus disorder prediction 1 28 - -
Ahy6g2482 284 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2482 Ahy-Chr6 109652296 109653535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2482 54 284 C2H2 Transcription Factor Family AT5G10970 38.057 6.12e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g2482 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2482 - - gmx:100820461 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3177 16 148121718 148123078 Ahy6g2482 6 109652296 109653535 hybridization
Ahy6g2482 6 109652296 109653535 Ahy20g2063 20 116399453 116400640 PCT
Ahy6g2482 6 109652296 109653535 Ahy10g1620 10 93606529 93607705 PCT
Ahy20g2063 20 116399453 116400640 Ahy6g2482 6 109652296 109653535 PCT
Ahy10g1620 10 93606529 93607705 Ahy6g2482 6 109652296 109653535 PCT