Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2475 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAGACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACCAATTTCCCTTTCAACCCTAACACCACCAACAACAATGTCTCTCAATCTTCTTCTTCAAAGCTTCTCTCACCAACTTTGACCGCAAAATTGCACAGATGCTACATGGCTTCTTTGCAATTAACTCGCCAACAAGATCCTCAAAATCATAATAATAATAATAGCACTAATAGTAACTACTCCAAAGTGCAAATTAGTGAAAAGGGTGATTCAATTGTGTCATCAAAAAAGAGAACACATGATGAGGAGGAGGAAGAGGTGAAACAAGATTCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAACATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTGTTTTTTCACATCAAGATATTTAA 609 0.4056 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNTTNNNVSQSSSSKLLSPTLTAKLHRCYMASLQLTRQQDPQNHNNNNSTNSNYSKVQISEKGDSIVSSKKRTHDEEEEEVKQDSEANWVVKKVKGMDQIGPQFKPLEEHHIDQMIEELLHYGSIELCSVFSHQDI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2475 202 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Ahy6g2475 202 MobiDBLite consensus disorder prediction 131 151 - -
Ahy6g2475 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 196 - -
Ahy6g2475 202 CDD AP2 6 60 IPR001471 GO:0003700|GO:0006355
Ahy6g2475 202 MobiDBLite consensus disorder prediction 103 130 - -
Ahy6g2475 202 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Ahy6g2475 202 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Ahy6g2475 202 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Ahy6g2475 202 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Ahy6g2475 202 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ahy6g2475 202 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Ahy6g2475 202 MobiDBLite consensus disorder prediction 103 151 - -
Ahy6g2475 202 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2475 Ahy-Chr6 109565184 109566316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2475 1 202 AP2-EREBP Transcription Factor Family AT5G25190 57.921 7.26e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g2475 AP2 6.70E-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3173 16 148054843 148056130 Ahy6g2475 6 109565184 109566316 hybridization
Ahy6g2475 6 109565184 109566316 Ahy20g2059 20 116176080 116177327 PCT
Ahy6g2475 6 109565184 109566316 Ahy10g1613 10 93305518 93306723 PCT
Ahy20g2059 20 116176080 116177327 Ahy6g2475 6 109565184 109566316 PCT
Ahy10g1613 10 93305518 93306723 Ahy6g2475 6 109565184 109566316 PCT