Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2465 ATGGCTTACCACAACCACAACCCTCTCTCTGTCTCTGACTCACACGACGACCTTCCTCTTCACCATTTCACCCACCAATCCAACACCTTCCCTTCCTCTCCTCCCCACCCTAACTCCAAACCTAACTCCGATCCTCTCCAAACCACCGCTCCCAGCTGGCTCAACAACGCACTCCTCCGAACCAACTTCACCGACACCACCAACACCACCGCCACTTCCAACGCTAATAACACCAACGCCAACTCCAATTTCCTCAATCTCCACACGGCCTCCGACTCCGCCGCATCCCAGCCATCTCCGTGGCTCGACGCTACCGGTGTCAACTTCGAACCGGTCGATTTGAAGACCGGAATTGCCAACGCCAAGGGGGACGTGGCAGCCGCCGTGGTCGGAGATGGTGGCGGAGGTGACGGCGGAGGAGGAGGGATGGTGAATTGGCAGGTTGGAAGATGGAAGGCGGAGATACTGGCGCACCCTCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTGCCTAGGATCGACGCACAGCTGGCACAGTCACAGAATGTAGTCTCCAAGTACTCTGCCTTCGGCCATGGCGTTGGAGATGACAAAGAACTCGACCAGTTCATGTCGCACTACGTTTTGCTTCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCTACAATGTCCGACGACGAAGATGATCAAGTTGATAGTGAGGCCAATCTGTTTGACGGTAGTTTGGATGGAACAGATAGCATGGGGTTTGGCCCTCTTATTCCGACAGAGAACGAGAGGTCTCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAAAATGGTTATAAGGAGAAAATTGTTGACATAAGAGAAGAAATTTTGCGCAAGAGACGGGCAGGAAAACTTCCCGGCGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCCCATTCCAAATGGCCTTACCCAACAGAGGAAGATAAGGCAAGGCTGGTGCAGGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGAAACAATGCAGGTGATAACAATGCTGATCGGTATATGTAA 1269 0.5154 MAYHNHNPLSVSDSHDDLPLHHFTHQSNTFPSSPPHPNSKPNSDPLQTTAPSWLNNALLRTNFTDTTNTTATSNANNTNANSNFLNLHTASDSAASQPSPWLDATGVNFEPVDLKTGIANAKGDVAAAVVGDGGGGDGGGGGMVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVSKYSAFGHGVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSEANLFDGSLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKRNNAGDNNADRYM* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2465 422 Pfam KNOX2 domain 205 255 IPR005541 GO:0003677|GO:0005634
Ahy6g2465 422 SMART ELK_2 313 334 IPR005539 GO:0003677
Ahy6g2465 422 SUPERFAMILY Homeodomain-like 335 399 IPR009057 -
Ahy6g2465 422 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 38 412 - -
Ahy6g2465 422 Pfam KNOX1 domain 152 192 IPR005540 GO:0003677|GO:0005634
Ahy6g2465 422 MobiDBLite consensus disorder prediction 1 50 - -
Ahy6g2465 422 MobiDBLite consensus disorder prediction 390 422 - -
Ahy6g2465 422 Gene3D - 334 395 - -
Ahy6g2465 422 SMART KNOX2_2 201 256 IPR005541 GO:0003677|GO:0005634
Ahy6g2465 422 SMART KNOX1_2 149 193 IPR005540 GO:0003677|GO:0005634
Ahy6g2465 422 SMART HOX_1 335 400 IPR001356 GO:0003677
Ahy6g2465 422 MobiDBLite consensus disorder prediction 390 407 - -
Ahy6g2465 422 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677
Ahy6g2465 422 ProSiteProfiles ELK domain profile. 313 333 IPR005539 GO:0003677
Ahy6g2465 422 CDD homeodomain 336 397 IPR001356 GO:0003677
Ahy6g2465 422 Pfam ELK domain 313 334 IPR005539 GO:0003677
Ahy6g2465 422 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677|GO:0006355
Ahy6g2465 422 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2465 Ahy-Chr6 109384157 109387818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2465 1 410 Homeobox Transcription Factor Family AT5G25220 65.618 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy6g2465 KNOX2 1.20E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2465 - - zju:107421143 575.474