Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2392 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCCGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAACAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCAGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGGGGTACCAATGGGTTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGAAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATACTAATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTCGCTCAGTTACACCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATGGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACGGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCGGTACGTGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACGAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2688 0.4743 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQQPQQQQQQQQPQQQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRILMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHGMHQQDRVAGAGSVTADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
Ahy6g2392 895 MobiDBLite consensus disorder prediction 234 268 - -
Ahy6g2392 895 Pfam WD domain, G-beta repeat 611 642 IPR001680 GO:0005515
Ahy6g2392 895 Pfam WD domain, G-beta repeat 650 685 IPR001680 GO:0005515
Ahy6g2392 895 Pfam WD domain, G-beta repeat 692 729 IPR001680 GO:0005515
Ahy6g2392 895 Pfam WD domain, G-beta repeat 774 808 IPR001680 GO:0005515
Ahy6g2392 895 Pfam WD domain, G-beta repeat 858 895 IPR001680 GO:0005515
Ahy6g2392 895 CDD WD40 607 895 - -
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 810 IPR001680 GO:0005515
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Ahy6g2392 895 MobiDBLite consensus disorder prediction 423 542 - -
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 688 IPR001680 GO:0005515
Ahy6g2392 895 Gene3D - 587 741 IPR015943 GO:0005515
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 652 IPR001680 GO:0005515
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Ahy6g2392 895 Pfam LisH 10 36 IPR006594 GO:0005515
Ahy6g2392 895 MobiDBLite consensus disorder prediction 147 189 - -
Ahy6g2392 895 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 895 - -
Ahy6g2392 895 SMART Lish 8 40 IPR006594 GO:0005515
Ahy6g2392 895 MobiDBLite consensus disorder prediction 466 526 - -
Ahy6g2392 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Ahy6g2392 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Ahy6g2392 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Ahy6g2392 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Ahy6g2392 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Ahy6g2392 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Ahy6g2392 895 ProSitePatterns Trp-Asp (WD) repeats signature. 672 686 IPR019775 -
Ahy6g2392 895 MobiDBLite consensus disorder prediction 423 455 - -
Ahy6g2392 895 MobiDBLite consensus disorder prediction 87 125 - -
Ahy6g2392 895 MobiDBLite consensus disorder prediction 377 410 - -
Ahy6g2392 895 MobiDBLite consensus disorder prediction 147 173 - -
Ahy6g2392 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ahy6g2392 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 688 - -
Ahy6g2392 895 Coils Coil 120 140 - -
Ahy6g2392 895 SUPERFAMILY WD40 repeat-like 605 895 IPR036322 GO:0005515
Ahy6g2392 895 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 895 IPR044716 GO:0003714
Ahy6g2392 895 Gene3D - 742 895 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2392 Ahy-Chr6 108037743 108046887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2392 656 855 Miscellaneous Gene Families AT5G08390 26.570 3.54e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ahy6g2392 WD40 0.032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2392 - - aip:107605121 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3073 16 146271644 146281552 Ahy6g2392 6 108037743 108046887 hybridization
Ahy6g2392 6 108037743 108046887 Ahy18g2605 18 128384093 128392496 PCT
Ahy6g2392 6 108037743 108046887 Ahy8g2379 8 46270606 46278888 PCT
Ahy18g2605 18 128384093 128392496 Ahy6g2392 6 108037743 108046887 PCT
Ahy8g2379 8 46270606 46278888 Ahy6g2392 6 108037743 108046887 PCT