Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2389 ATGGAAACAGAGAAGCTTCCTGCAATGGATAATAACACCTTACTATCTGAAACTTTCTTGAACACAACACAGTTTGGTGGAGGAGATCTGTTTTCCATTTTAGAGAGCCTTGAAGACTTGAATAGTCCTCCTCCTCCTCCAAGGAAGAGACAGAAGGTTACTGTATCAGCATCCGAAGAAGAAAATAATAACAACGCTGATGGAGAAGAAAGGGTATTATCGTCACATATAACTGTTGAGCGCAACCGGAGAAAGCAAATGAATCACCATTTGTCTGTGTTGAGGTCACTTATGCCCTCCTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAACGAATTGCAACAAGTTCTACAATGCCTAGAGGCCAAGAAAAATAGAAAGGTATTTTACACGGATAACGTACTAAGCCCAAGATTAATTATTCCAAGCCCAAAATTAGGCCCAAGAATACTAACCCTGCCGCCCATTAGTCCAAGAACTCCACAACCTGGAAGCCCATGGTTGCACTCCATTGAGCCTTCTCCTTCTTCTTCTGGATCTGATAATATGAATGAGCTTGTTGCGAATTCAAAGTCGGTGATTGCTGACGTGGAGGTTAAGTTTTGCGGTCCGCATGTATTAGTGAAAACTGTCTCCCCGAGAATTCCTGGGCAAGCCATGAGGATAGTATCAGCGCTTCAAGACCTTGCTCTTGAGATTCTTCATCTCACCATTACCACTTCTGATGAAACCATGCTATACTCTTTCACTATTAAGATTGGGATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACATATCCAGCAAACATTCTGCTAA 849 0.4205 METEKLPAMDNNTLLSETFLNTTQFGGGDLFSILESLEDLNSPPPPPRKRQKVTVSASEEENNNNADGEERVLSSHITVERNRRKQMNHHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQCLEAKKNRKVFYTDNVLSPRLIIPSPKLGPRILTLPPISPRTPQPGSPWLHSIEPSPSSSGSDNMNELVANSKSVIADVEVKFCGPHVLVKTVSPRIPGQAMRIVSALQDLALEILHLTITTSDETMLYSFTIKIGIECQLSAEELAQHIQQTFC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2389 282 MobiDBLite consensus disorder prediction 38 75 - -
Ahy6g2389 282 MobiDBLite consensus disorder prediction 170 191 - -
Ahy6g2389 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 137 IPR036638 GO:0046983
Ahy6g2389 282 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 46 282 - -
Ahy6g2389 282 PANTHER TRANSCRIPTION FACTOR FAMA 46 282 IPR044283 GO:0003700|GO:0010052
Ahy6g2389 282 MobiDBLite consensus disorder prediction 172 191 - -
Ahy6g2389 282 Gene3D - 60 136 IPR036638 GO:0046983
Ahy6g2389 282 Pfam Helix-loop-helix DNA-binding domain 75 123 IPR011598 GO:0046983
Ahy6g2389 282 SMART finulus 77 128 IPR011598 GO:0046983
Ahy6g2389 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2389 Ahy-Chr6 107948504 107951801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2389 14 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 44.543 3.36e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy6g2389 HLH 4.50E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2389 K20558 - gmx:100809717 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2779 16 140895241 140898949 Ahy6g2389 6 107948504 107951801 hybridization