Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2346 ATGAAACAAAAGAAAAATTTTGATCTTGTCCATCTCAATGATCCCATTTCCAGAAAGCCTAAAGTAATTCGTATATTTCTAACTGATCAAGATGCTACTGACTCTTCCGGTGACGAAGAAGAAGAGTTCTTCCCTCGCCAAAGGGTGAGGCATTACATCAACCAAATTAATATTCACCCACCCTGCGAAACCGTTACCAATTCCCGAAAGAGGCTTGCCGGAATATCCTCCCCTTCATGCCGGCGACCAGTGAAGACCACTGTGGCCGCCGCCACCACCCCAACCACAACCACCACCAATAACAACAACAATGGCAGAAAGTACCGTGGTGTAAGACAAAGGCCATGGGGTAAATGGGCGGCCGAGATTCGAGATCCAAACCGGCACATCCGAGTTTGGCTAGGAACTTTTGACACTGCCGAAGAAGCTGCCAGGGAGTATGATAATGCCGCGATCAAGTTTCGCGGTCCGAAAGCTCTAACCAACTTTCCGATATCACCACCATCACAAGAAAAGAATGTAGACATCTACGACTCATCATGCGAAGATGAGTGCCTCGTCAACATGTCTTCATCACCTACTTCGGTTCTCCATTCCACAAGTCCCAAAACAGGAAAACCACAGAAGCACCACAAAGAAAACGATGGGGAGTGTGAGGGGGAGACGAGTTTCTTTGATGATGAGACGTTGGGGAATGACATGTTCAACTTTGCAACTTTGCATGATGAGTGTGTGGCTACAATGTTTGATGATGAAACTACTTCTGCACGGGTCTTTGTTAGTGAAAGTTTCAAGTTTGGTGACCACATTGAGCTTGGTAATGCAAGTTTGTACCAGGTTGACGATTATTTTGAAGAAATTTTGCTAGGCTCGGATCCTCTTGTGGTGCTGTGA 894 0.4609 MKQKKNFDLVHLNDPISRKPKVIRIFLTDQDATDSSGDEEEEFFPRQRVRHYINQINIHPPCETVTNSRKRLAGISSPSCRRPVKTTVAAATTPTTTTTNNNNNGRKYRGVRQRPWGKWAAEIRDPNRHIRVWLGTFDTAEEAAREYDNAAIKFRGPKALTNFPISPPSQEKNVDIYDSSCEDECLVNMSSSPTSVLHSTSPKTGKPQKHHKENDGECEGETSFFDDETLGNDMFNFATLHDECVATMFDDETTSARVFVSESFKFGDHIELGNASLYQVDDYFEEILLGSDPLVVL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2346 297 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Ahy6g2346 297 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Ahy6g2346 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 287 - -
Ahy6g2346 297 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Ahy6g2346 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 17 287 - -
Ahy6g2346 297 MobiDBLite consensus disorder prediction 191 219 - -
Ahy6g2346 297 MobiDBLite consensus disorder prediction 94 113 - -
Ahy6g2346 297 MobiDBLite consensus disorder prediction 94 108 - -
Ahy6g2346 297 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Ahy6g2346 297 CDD AP2 107 166 IPR001471 GO:0003700|GO:0006355
Ahy6g2346 297 SUPERFAMILY DNA-binding domain 107 166 IPR016177 GO:0003677
Ahy6g2346 297 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Ahy6g2346 297 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2346 Ahy-Chr6 107051135 107052209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2346 21 198 AP2-EREBP Transcription Factor Family AT4G27950 47.090 8.96e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g2346 AP2 1.60E-15 CL0081