Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2318 ATGGACTCCACAAATCTGAGCTACGAGCAGAAGCTTCAAGTTGTGGCACGAATCGTAGACGAAGGCGACGCACGCGTTTGCGACGCGCCGCCCCGTGAAGTAGAGCTCGGGCTTACGGCGACCCTCAAACCCCACCAGGTTGAAGGGGTTTCATGGCTTATACGGAGGTATAAACTCGGGGTCAACGTCGTTCTCGGGGATGAGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTACTAAGCTATCTAAAAGTATACCAATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTGGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGAGCTCCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGAGGGCATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGATACTATTATCGAAGAGTGCGCTAAGACTCCGGGCTCAGATAACTTCCTCGTGTTGTTTTGCTGA 2568 0.4217 MDSTNLSYEQKLQVVARIVDEGDARVCDAPPREVELGLTATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAIGLLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRELRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHEGISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSDTIIEECAKTPGSDNFLVLFC* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2318 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 536 IPR027417 -
Ahy6g2318 855 Gene3D Leucine Aminopeptidase, subunit E, domain 1 704 843 IPR043472 -
Ahy6g2318 855 Gene3D - 21 287 IPR038718 -
Ahy6g2318 855 SMART helicmild6 398 493 IPR001650 -
Ahy6g2318 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 275 IPR027417 -
Ahy6g2318 855 MobiDBLite consensus disorder prediction 648 669 - -
Ahy6g2318 855 Gene3D - 288 603 IPR027417 -
Ahy6g2318 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 540 IPR001650 -
Ahy6g2318 855 Pfam SNF2-related domain 60 348 IPR000330 GO:0005524|GO:0140658
Ahy6g2318 855 CDD SF2_C_SNF 367 504 - -
Ahy6g2318 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Ahy6g2318 855 PANTHER HELICASE CHR10-RELATED 9 841 - -
Ahy6g2318 855 Pfam Helicase conserved C-terminal domain 369 493 IPR001650 -
Ahy6g2318 855 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 9 841 - -
Ahy6g2318 855 SUPERFAMILY Macro domain-like 708 834 IPR043472 -
Ahy6g2318 855 SMART ultradead3 38 238 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2318 Ahy-Chr6 106561418 106580676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2318 369 523 RAD5 or RAD16-like Gene Family AT5G22750 34.839 2.07e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy6g2318 SNF2_N 2.00E-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2318 K20092 - gmx:100797182 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2706 16 139480080 139504005 Ahy6g2318 6 106561418 106580676 hybridization