Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2286 ATGGCTTCTAAACTTTACAAAGATGCCTCCAATGGTGATGAGGCAACAACAAAGCCTGTTCACTTCTTCAAGATCCTGCTCCCGAGCACCATTTTAGATGGAAAAATTATGATTCCTAGAAAGTTTGTAAGGGAATATGGAGAACGCTTGTCCAACAAAGTTGTTCTTAAGCTTCCAAATGGCACAGAATGGGAGGTATATTTGGAGAAACATGATGGAAGAATTTGGTTACAAAATGGTTGGAAAGAGTTTGTGGAGTATCACTCTCTACGGTTTGGGGATCTATTGGTTTTTAGATTTGATGGAACATCTCATTTTAATGTGTTCATATGTGATATGAGTGCCACGGAAATAGACTACCCCTTCAAGAATAAATATGGTAAAAGGGCCAACACTAGTGATGAGGAACTTCTTCCTCGTAAAACCAAGAGAACAAATGCAAACAACAAAGATGGGGGTAAGTTGAAGAATCCAAGGGAAGGAAAGATGTCCAATGACTTGCTTTCTAAAACTAAGCCATCGGGTTTTGGAAAATTTGAAACTACAGAAGTTGCGAAAAATACTTCCTTCACGGTTATGATAAAACCAAACAGAGGATCATGTTGCATGTGGTTACCGAGGGGCTCCTTAAAGGATTATATCAAACCTGGCAAGCAAACTGTTACATTGTTGGTTGGAGAAAGATCTTCAAAGGTTAGGTTGATCTATTACGAAAAACATTCTACCGGTTGCCTTACAGCAGGTTGGACAAGATTTGCAAGGGAATCTGATTTGGAAGTAGGGGATGCATGTTCCTTTGAATTACTAGCTAACCATTCTGAAGACATAGTCATGAAGGTTTCCATTTTTAAGCACTCCACTACTGAGCCATAA 873 0.3918 MASKLYKDASNGDEATTKPVHFFKILLPSTILDGKIMIPRKFVREYGERLSNKVVLKLPNGTEWEVYLEKHDGRIWLQNGWKEFVEYHSLRFGDLLVFRFDGTSHFNVFICDMSATEIDYPFKNKYGKRANTSDEELLPRKTKRTNANNKDGGKLKNPREGKMSNDLLSKTKPSGFGKFETTEVAKNTSFTVMIKPNRGSCCMWLPRGSLKDYIKPGKQTVTLLVGERSSKVRLIYYEKHSTGCLTAGWTRFARESDLEVGDACSFELLANHSEDIVMKVSIFKHSTTEP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2286 290 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Ahy6g2286 290 CDD B3_DNA 190 284 IPR003340 GO:0003677
Ahy6g2286 290 MobiDBLite consensus disorder prediction 133 167 - -
Ahy6g2286 290 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Ahy6g2286 290 Gene3D - 177 287 IPR015300 -
Ahy6g2286 290 CDD B3_DNA 21 112 IPR003340 GO:0003677
Ahy6g2286 290 PANTHER B3 DOMAIN-CONTAINING 16 124 - -
Ahy6g2286 290 Gene3D - 14 115 IPR015300 -
Ahy6g2286 290 SMART B3_2 189 286 IPR003340 GO:0003677
Ahy6g2286 290 SMART B3_2 22 114 IPR003340 GO:0003677
Ahy6g2286 290 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677
Ahy6g2286 290 Pfam B3 DNA binding domain 190 285 IPR003340 GO:0003677
Ahy6g2286 290 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 16 124 - -
Ahy6g2286 290 SUPERFAMILY DNA-binding pseudobarrel domain 186 285 IPR015300 -
Ahy6g2286 290 PANTHER B3 DOMAIN-CONTAINING 185 284 - -
Ahy6g2286 290 ProSiteProfiles B3 DNA-binding domain profile. 245 286 IPR003340 GO:0003677
Ahy6g2286 290 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 185 284 - -
Ahy6g2286 290 MobiDBLite consensus disorder prediction 133 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2286 Ahy-Chr6 105906965 105909509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2286 187 284 B3 DNA Binding Superfamily AT3G18990 33.663 1.72e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy6g2286 B3 9.60E-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2286 - - aprc:113849508 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2672 16 138663655 138666803 Ahy6g2286 6 105906965 105909509 hybridization