Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2275 ATGAGCGGGAGGATGAATAAGTGGTCCCATTTGAAGATGGCTTGGATTGAACACTCCCAAATCAACCGAAAAGACGGTTACATAACAAACCCACCTCCTCTTGTTTCAACATCCCCATATTCTGGAACTTTCCAGAAAGAACCTTCTGCTTCAACAACACCCTCACCTTCCACATCCGGCGCTAAAATCAGTCCAGCTGTGCTCTTCATCATAGTGATTCTAGCTGTTCTTTTCTTCATCTCCGGTCTCCTTCACCTTCTTGTTAGGTTTCTCGTTAAAAACCCTTCATCTTCCTCTGCATCTGCTCAACCTAATCGGCACCATGAAGGTTCTCTCTCTGACACTCTTCAGAGGCAGCTTCAGCAGCTTTTCCATCTCCATGACTCTGGTCTTGACCAGGCTTTCATCGATGCGCTTCCTGTTTTCCAGTACAAGGAGATCAAGGGGCCGAAGGAGCCTTTCGACTGCGCCGTTTGCCTCTGCGAGTTTTCCGACAAGGATAAGCTCCGGTTGCTCCCTGTGTGCAGCCATGCCTTCCACATCAGCTGTATAGACACATGGCTTCTTTCGAATTCCACTTGCCCACTCTGTAGAGGAACACTCTTCGCGCCGGGGTTTTCCATGGAGAATCCGGTGTTTGATTTCAATGATTTGAGGGAAGACGAGGGCTGCCAATTCCCCTGTAGTAACAATAACAATGGAGGGAAGATGGTTGCAGTTCAAGAGATTGAAGAAGCTGCGGACAAGGGGCTTGTCCCTGTGAGGCTTGGTAAATTTAGGAGGGTTGATTTGGAGGCGGCCGAGCCGGAAGGCGGAGAGGCTAGTAGTAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTACTTGGAAAATCGGATCTCCGGATAACCTTGAATTGTGATCATCGCCGGCAGGGTCGCGGCGATGATAATTCGGAGGAGGGATCAAGTGAGGTTGAGAGGGAAGGAAAGAACATTAATAGTGTTAGCAGAGGAGAGAGCTATTCTGTTTCCAAAATATGGTTGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCAGATGCACACAACATTGGATTACCATCTTCTCTTAATTCAGATTTGCCTTGGATGAGAGAAATGGAAGGTACATCAGAAAAGGTATAA 1161 0.4694 MSGRMNKWSHLKMAWIEHSQINRKDGYITNPPPLVSTSPYSGTFQKEPSASTTPSPSTSGAKISPAVLFIIVILAVLFFISGLLHLLVRFLVKNPSSSSASAQPNRHHEGSLSDTLQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGPKEPFDCAVCLCEFSDKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLFAPGFSMENPVFDFNDLREDEGCQFPCSNNNNGGKMVAVQEIEEAADKGLVPVRLGKFRRVDLEAAEPEGGEASSSNLDARRCFSMGSYQYVLGKSDLRITLNCDHRRQGRGDDNSEEGSSEVEREGKNINSVSRGESYSVSKIWLWSKKGKFSVSSDAHNIGLPSSLNSDLPWMREMEGTSEKV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2275 386 Pfam Ring finger domain 155 198 IPR001841 -
Ahy6g2275 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Ahy6g2275 386 MobiDBLite consensus disorder prediction 38 60 - -
Ahy6g2275 386 MobiDBLite consensus disorder prediction 307 333 - -
Ahy6g2275 386 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Ahy6g2275 386 SMART ring_2 156 197 IPR001841 -
Ahy6g2275 386 MobiDBLite consensus disorder prediction 355 386 - -
Ahy6g2275 386 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 20 364 - -
Ahy6g2275 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 364 - -
Ahy6g2275 386 MobiDBLite consensus disorder prediction 307 332 - -
Ahy6g2275 386 CDD RING-H2_PA-TM-RING 155 198 - -
Ahy6g2275 386 SUPERFAMILY RING/U-box 135 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2275 Ahy-Chr6 105644940 105646825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2275 55 353 C3H Transcription Factor Family AT2G18650 42.433 6.33e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2275 - - tcc:18600728 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2659 16 138413282 138415278 Ahy6g2275 6 105644940 105646825 hybridization