Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2272 ATGTCAATTTTCTTTTTCCTTTATAATATAACCCATGCTAACGACTTTTCAGAGCTTAACTTATTTTCTTTTGGTCACACAATGCAGATTGTGATTTGGTTGGTGATTCCAGCAAGTAGTTCTTCAACAACGGATCATGCCAACAACACTCTTGCACTCTTTGTTCTAATTCAGTATATTCCCAGGCTCTTTCTTATCTTCCCTTTGAACCAGCGTATTACGAAAACCACTGGCGTTATTGCCAAAACCCCCTGGATTGCAGCCGCATACAATCTTCTTCTCTACATGCTAGCTAGTCATATTACAGGAGCAACGTGGTATCTGTCCTCAATTGGGAGACAATTCAACTGCTGGAAAGCAGAGTGCGAAAGAGAGAATAGATCAAAAACCATAACTTGCTTGCCTACTTTTCTTGATTGTAACAGTGTGAGTTTACCTGCAAGGCAACACTGGCTAAATGTCACTCAAGTTATTAACAGATGCGATCCCAAGGCCAAGCTCAACGTCAAGTATAAGTTTGGCATGTTTGCAGATGCTTTTCTCAATGACGTTGTTACTACTAACTTTGTGGAAAGATACTTCTATTGTCTTTGGTGGGGATTAAGAAATTTAAGCTCGTATGGACAGAATTTGGACACAACCACATACTTCCCAGAGACATTTTTCTGCATCTTCTTATGTCTTGCTGGATTAATTCTCTTCTGTCTTTTGATTGGAAACATGCAGACATACTTGCAATCAATGTCAGTTAGACTTGAAGAATGGAGGATTAGGAAGAATGACACTGAGCAATGGATGAGACATCGCCAATTGCCTCCAGACTTGCAGGAACGCGTTCGTCGCTTTGTTCAGTATAAATGGCTTGCCACCAGAGGAGTGAATGAAGAGTCCATACTACTTGATCTACCTTTGGATCTCCGTCGTGAAATTCAACACCACTTGTGCCTTTCTCTTGTTCGACGTGTCCCTTTCTTCTCACAAATGGATGACCAGCTCCTTGATGCAATCTGTGAACGGCTGGTGTCATCATTAAGCACAGAAGGCACATATATATTCCGAGAGGGAGATCCGGTCGACGAAATGTTGTTCATAATAAGAGGACAATTGGAGAGCTCCACAACCAATGGAGGAAGGTCTGGTTTCTACAATTCCATCACACTTAGGCCTGGCGACTTTTGCGGCGAGGAGCTGTTGACATGGGCCTTAATGCCAAATTCCACCCTCAACCTGCCTTCCTCTACTCGAACTGTAAAAGCTTTATCAGAAGTCGAAGCTTTCGCGTTGGAAGCAGAGGATCTAAAGTTCGTGGCAAGTCAATTCAAGCGGCTTCATAGCAAGAAACTCCAGCACGCGTTTAGGTACTACTCCCAGCAATGGAGGACATGGGCTTCTTGTTTCATACAGGCGGCATGGCGAAAGTATCAGAAGAGGAAAGCGGCGAGGGAGTTGTCTTTGAAGGAGGGACACTTTTACATGTCTCTCCCTGAGAAGGACAGAGAAATGGATCAAAGTGGAGGATCATCATCATCTCCAGGGAATGTGAGAAAGGTTCAGAACATTAGTACAACCATTTTGGCTTCAAGGTTTGCGGCTAATACAAGGAAAGCTAAGCTTCGTGGCAGTGATCCTGTGCCACAGTTGTTCAAGCCTGATGAACCTGACTTCTCTGTAGATCGTGAGGAAGTTTAG 1689 0.4352 MSIFFFLYNITHANDFSELNLFSFGHTMQIVIWLVIPASSSSTTDHANNTLALFVLIQYIPRLFLIFPLNQRITKTTGVIAKTPWIAAAYNLLLYMLASHITGATWYLSSIGRQFNCWKAECERENRSKTITCLPTFLDCNSVSLPARQHWLNVTQVINRCDPKAKLNVKYKFGMFADAFLNDVVTTNFVERYFYCLWWGLRNLSSYGQNLDTTTYFPETFFCIFLCLAGLILFCLLIGNMQTYLQSMSVRLEEWRIRKNDTEQWMRHRQLPPDLQERVRRFVQYKWLATRGVNEESILLDLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFYNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFALEAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWASCFIQAAWRKYQKRKAARELSLKEGHFYMSLPEKDREMDQSGGSSSSPGNVRKVQNISTTILASRFAANTRKAKLRGSDPVPQLFKPDEPDFSVDREEV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2272 562 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 28 558 - -
Ahy6g2272 562 MobiDBLite consensus disorder prediction 504 519 - -
Ahy6g2272 562 MobiDBLite consensus disorder prediction 498 519 - -
Ahy6g2272 562 Gene3D Jelly Rolls 322 442 IPR014710 -
Ahy6g2272 562 CDD CAP_ED 324 455 IPR000595 -
Ahy6g2272 562 SUPERFAMILY Voltage-gated potassium channels 47 246 - -
Ahy6g2272 562 Pfam Ion transport protein 21 251 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ahy6g2272 562 SUPERFAMILY cAMP-binding domain-like 254 449 IPR018490 -
Ahy6g2272 562 SMART cnmp_10 324 455 IPR000595 -
Ahy6g2272 562 MobiDBLite consensus disorder prediction 536 562 - -
Ahy6g2272 562 ProSiteProfiles cAMP/cGMP binding motif profile. 324 454 IPR000595 -
Ahy6g2272 562 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 28 558 - -
Ahy6g2272 562 Gene3D Helix hairpin bin 246 315 - -
Ahy6g2272 562 Pfam Cyclic nucleotide-binding domain 347 435 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2272 Ahy-Chr6 105614230 105617502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2272 29 562 Ion Channels AT5G14870 69.078 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2272 K05391 - gmx:100802812 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2656 16 138385729 138389308 Ahy6g2272 6 105614230 105617502 hybridization