Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2269 ATGGTGATCGTTAATGGTGTTGCTAGCAGAACAAGGAGCAAGAAGAAAGAGAGGTCTTTGAATCCGTCACCGTGTGTTGGATCAGGATCCCGAACATTGTCTTCCTCGTCATCAAAGTCCAGCGAGAGAAAGAAGGGGAAAAGAAAGGCGGAAGTTGATGTTGAGGTTGTGGAATTTGACTATGAGGCTTTCCATGAAAGATGGATGATGGAACCTCGGCAACCTCTTGAGATGCCTCCACCAAGAGACGTGATTGAACTCAGCGATGATAGTGATGATAATGCAGCTGCTGAGGGATTGCAGAAGCTTCGTCGTGGGTATGTTAATGAAGAGAAGAAGGAAGAAGTTCAAGAAAGAAACGTGTTTCCTATTGATGGTGCTGGAACTTCTGCCAACGATCCTATAATCGTTGGTTTGAGTGATACTAGTAGTGATGAAGGCACTGATGACAGTAACGAGGGCCGTGGAAGAAGTTTGGACTGGGATTTTGGATTATCAAGTGAGTCAGAGGACACTGATAACAGTGATGATGAAGATTTCAGAGTGGAGGATGAGGGAGAAGGTGAAGGTTCAGCATCAGCTTCAGCATCAACTTCAGCTTCAAGCAGTGATGATAGTGGTTCAAGTTCTTTTGATGATGAGGATGAAGAGGAGGAAAAGGAGAAGAGGAGATGTAAGAGGAGGAAGAAGGAGAAGAAGAGAAAAGAGCCAACTTTTGAGTCTCATAGCAATAAAGTTTTGCGCTGCGACGAGGTGATTGTGGAAACTGAATGCTCTGGAATTTGCAAGAAGAATGGTGAGAATAAGAACAATTCATCGTCAACCGAGAATAATGTATTTGATCATCAGCCAGAGAAAATGCTACCAAAGGATGCAGATTGTGCTAGTGTTCTCTTTGGAGAACGCAATACGGAGGGTTGTTCTTCAGAAAAAAATGAAGATAAGGAAATTAATGTAGCTAAGAAACCACTGGAGGTTTGTTCTTCAAAAAAGAATGAAGATAAGGAAGAGAATGTAGTTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTAGCTAAGAAACTAGTGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAGCGAAGACAAAGGAAAGAAGGTGGCAAAGAAACCAATGCCTGCGGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCCCACCTGAGGAGGATGATTCAGAAAAGGATGAAAAGAAACCGGTAAAACAGAAGGGTCGTGAAAGTGTGTCTGATTTTTTGGCAAAGGACAAAGGGGACTCGCCGATGATCGATGAAAGAGTGCCAATGAATGATGAAAGAATGGAGAGTGCAGAGGAAGAGAGGGTGAACAAGAAGGAAGGAGAGGCTGAAGGGAAGCATAAGGCCGGGGCAGATTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTAGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTTGGATTAAGCATAATCCAGATAGTGTTCATAAGCAAGATACAATCTCAAAGGAACCAGCTCTCGATGTTCAAAGAAAATTTTTTTTTCAAAAGAAAGTGCCAATTGAAAAAACTGAATCTGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATGCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGGTTGGCTGTGTTGAGAATGTCGAAACACAACAGAACATAGAGGCTCCGGCAACCAATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGGTCATAGACATAAAAGGCATGCCGGTACCCTTTGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGAGGCTCCATTTGGTGTCCGAGAAGGTGGTTACTCTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAGGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTTGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACTGGAAAGACGCGGCTGACCATCGTGTTCCTCCAGACATACTTGGAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGCTAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACATCAGGAAAAGAGCACCGAGCTGCATGGAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCGGATGGTGAAGCTGTATTCTTGGTTCAAAGAACGAAGTATTCTTGGAATCAGCTACAGCCTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAAAAGCTTGAAGGAGAATGCTGCCAGAGGGGTCATGGGAAAAATCCTGCTTGAAGTTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTCCTTTCCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTTTCAGTTGGGAACCAGTTTCTTCAATCAGAACTGAGAATCTAAATGATGAGAATATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATCTTCCTGGCTTGAAAGATTGTGTGGTGACTTTGATGCCGGGTGATTTGCAGAAAAAACTTCTTGAGGGCATTGAAGGACATCCGAACACACTGCCTTTTGATAGCAAGTCGGCCTTGGTGTCCGTCCATCCATCCCTTTTCCTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGAGATGGAACATTTGAAAGACCTCAAACTGAATCCGAATGTTGGCGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAATGAGAAAGTGCTTGTGTTCAGCCAGTTCCTTGATCCTTTGACTTTAATCATGGAGCAGTTAAAGTCAATTTTCAATTGGACTGAGAAAAAAGAAGTTTTCTACATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATCCAAACAGCCAAGCAAAAATCTTGCTTGCATCCACTAAAGCTTGCTGTGAAGGAATCAGTCTGGTTGGTGCTTCCAGGGTGGTGCTGCTAGATGTGGTTTGGAACCCCTCGGTTGAAAGGCAAGCTATCAGCCGTGCTTATAGGCTGGGGCAAAAGAAGGTGGTCTACACTTATCATCTCATAACACATGGGACCACCGAGTACACAAAATACTGCCATCAGGCCAAGAAGGACCGGTTGTCTGAACTAGTCTTTTCAGCAAAGAACACTGAACAGGATGAGCCCAAGAGTTCTGCCGTGGAATTCGAGGATGAAATTCTCGATAACATGGTGCGCCATGGGAAACTGAGGGACTTGTTTGGTGACTGTGTGGTGCAGCCAAAGGACTGTGATTTGATTGATAATTTGGATCCTAAAATTTCCTGA 3867 0.4355 MVIVNGVASRTRSKKKERSLNPSPCVGSGSRTLSSSSSKSSERKKGKRKAEVDVEVVEFDYEAFHERWMMEPRQPLEMPPPRDVIELSDDSDDNAAAEGLQKLRRGYVNEEKKEEVQERNVFPIDGAGTSANDPIIVGLSDTSSDEGTDDSNEGRGRSLDWDFGLSSESEDTDNSDDEDFRVEDEGEGEGSASASASTSASSSDDSGSSSFDDEDEEEEKEKRRCKRRKKEKKRKEPTFESHSNKVLRCDEVIVETECSGICKKNGENKNNSSSTENNVFDHQPEKMLPKDADCASVLFGERNTEGCSSEKNEDKEINVAKKPLEVCSSKKNEDKEENVVKKPVEGCSSKKNEDKEKNVAKKLVEGCSSKKNEDKEKNVAKKPVEGCSSKKSEDKGKKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSPPEEDDSEKDEKKPVKQKGRESVSDFLAKDKGDSPMIDERVPMNDERMESAEEERVNKKEGEAEGKHKAGADCESSYKEREQHRVTTNPSRPKEAPLIELLAECFWIKHNPDSVHKQDTISKEPALDVQRKFFFQKKVPIEKTESEKERDMLWEEMDALLRLGEVDSLVGCVENVETQQNIEAPATNCKHKFVHDEETGIYCILCHWMVIDIKGMPVPFVSEYPREGSRKKLLSDGPNGLCFDEAPFGVREGGYSNKEGTVWDLIPADTKQNLYAHQLEGFEFLWKNLAGTMELPKLKSCDLNSTGGCIISHAPGTGKTRLTIVFLQTYLEVFPDCHPMIIAPASLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHRAAWSKVGGSAPSQEDIRMVKLYSWFKERSILGISYSLFQRLTGLKRDKSLKENAARGVMGKILLEVPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPSFPDTIPPELKKFCQRRLMQEKKESKGFSWEPVSSIRTENLNDENIKQLKQLMDPFVHVHKGSILQKNLPGLKDCVVTLMPGDLQKKLLEGIEGHPNTLPFDSKSALVSVHPSLFLCCTLSPKERALVEMEHLKDLKLNPNVGVKTRFLVEFVRICDAMNEKVLVFSQFLDPLTLIMEQLKSIFNWTEKKEVFYMSGKLDKNQRQLLIHSFNDPNSQAKILLASTKACCEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKDRLSELVFSAKNTEQDEPKSSAVEFEDEILDNMVRHGKLRDLFGDCVVQPKDCDLIDNLDPKIS* 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2269 1288 Pfam SNF2-related domain 731 1019 IPR000330 GO:0005524|GO:0140658
Ahy6g2269 1288 Gene3D - 1006 1270 IPR027417 -
Ahy6g2269 1288 Coils Coil 215 236 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 1 52 - -
Ahy6g2269 1288 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 381 1281 IPR044567 GO:0080188
Ahy6g2269 1288 Pfam Helicase conserved C-terminal domain 1086 1197 IPR001650 -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 191 207 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 23 37 - -
Ahy6g2269 1288 SMART ultradead3 705 947 IPR014001 -
Ahy6g2269 1288 CDD DEXHc_ATRX-like 709 940 - -
Ahy6g2269 1288 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 381 1281 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 83 120 - -
Ahy6g2269 1288 CDD SF2_C_SNF 1076 1208 - -
Ahy6g2269 1288 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1238 IPR001650 -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 433 524 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 262 291 - -
Ahy6g2269 1288 SMART helicmild6 1108 1197 IPR001650 -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 306 401 - -
Ahy6g2269 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1238 IPR027417 -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 72 246 - -
Ahy6g2269 1288 Gene3D - 689 988 IPR038718 -
Ahy6g2269 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 990 IPR027417 -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 263 281 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 166 185 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 38 52 - -
Ahy6g2269 1288 MobiDBLite consensus disorder prediction 304 527 - -
Ahy6g2269 1288 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 735 935 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2269 Ahy-Chr6 105554302 105559407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2269 1095 1227 RAD5 or RAD16-like Gene Family AT5G43530 38.346 1.66e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy6g2269 SNF2_N 3.50E-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2269 K10875 - aip:107627890 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2652 16 138285191 138290366 Ahy6g2269 6 105554302 105559407 hybridization