LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g2235	ATGAAGACATCATCATTCACTGACCTCCTTTCAAACAACTATAGTAACATAAACATGAACATGGATGATTTTGGTGATGCTAATGTTATTCAAAACCAAGAATCTGTTCCAAAATTCAAGTCTGTTACACCACCTTCACTACCACTTGAGAACTCACAAACTTCTTCTTACTTTCCTTTTACATCATCAACTTTTAGCCCAACTGAGTTTTTGAACTCATCTTTGTTCCTTTCTTCTCCTAATATTTTTGCATCTCCTACTATTGAGGCTTTTGCTGGCCACAGCTTCAACAACAAGGAAGATGAGAAGAACTTCTCTGAATTCTCTTTCCAAACACAGACTAAGACATCTTCTCCCTCTCAAGCAGAACCACTTAAGACACAAGACATGTGGAAATTCACAGAACCTATAAACCAAGCTGAATTTTCATCTCAGAGGGAAGCAACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGGTAGCAACAAAACCCGAATTACAAAGCAATTCGGTGCCTGAGTCCGGTTCTTTCAACTATGCTAACACGTCTCAGTCCATTAAAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGTGAGAATCCAAGGAGCTATTACAAGTGCACGCATCCGAATTGCGCAATGAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACAAATTACTGAGATAGTGTATAAGGGAACTCATAATCATCCTAAGCCACAGAGTACTAGAAGAAGTTCAAGCTCTCAACAAATTATTCATCAGCAGCCTTCTTCATCCTGCACTAACTCAGGAATCTCGGATCAGTCAGTGGTGACACTAGGCAATCCTCAACTTGATCGTGTGTCGATGCAAGAAGATTCTTCAGCTTCTATGGGAGAGGAAGAATTTGAACAAACTTCTCCAACAAGTTACTCTGGTGGAGATGCAGATGAACTTGGACCAGATGCCAAAAGATGGAAGGGGGAGAATGAACATGATGGTCATTCAGCCTATGGAAGTAGAACTGTTAGGGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATCGATATTCTTGATGATGGCTACAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAATGCAAGGAGTTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGGAAACATGTTGAGCGAGCCGCGACTGATATAAAATCAGTGATCACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCAGCACGCGGCAGCGCAGGTTACAACATGAACAGAAACTCTCTAAATAGAAACAATAGCAATGCACCGGCGGCACCAATAAGGCCTGCGGCCGTGAATGGTTATTCTAGCGCGCCAAATTTCACAAATTCACTTTACAATCCTAGGCTTCCGGCCACCGGAACTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGACTTTTCGGCTACACGTCTCTTGGAAGATCAATGGGTTCATATGGAAACAATTCGCAACTCTCGGATGGTGTATACATCAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTGAGTCATTTCTTTCAAAGAACTAA	1626	0.417	MKTSSFTDLLSNNYSNINMNMDDFGDANVIQNQESVPKFKSVTPPSLPLENSQTSSYFPFTSSTFSPTEFLNSSLFLSSPNIFASPTIEAFAGHSFNNKEDEKNFSEFSFQTQTKTSSPSQAEPLKTQDMWKFTEPINQAEFSSQREATKSEYPSTQSFSSEMVATKPELQSNSVPESGSFNYANTSQSIKEQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGTHNHPKPQSTRRSSSSQQIIHQQPSSSCTNSGISDQSVVTLGNPQLDRVSMQEDSSASMGEEEFEQTSPTSYSGGDADELGPDAKRWKGENEHDGHSAYGSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAATDIKSVITTYEGKHNHDVPAARGSAGYNMNRNSLNRNNSNAPAAPIRPAAVNGYSSAPNFTNSLYNPRLPATGTQESSSLDMLQGSGLFGYTSLGRSMGSYGNNSQLSDGVYIKAKDERKDDSFLESFLSKN*	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g2235	541	SMART	WRKY_cls	368	427	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	SMART	WRKY_cls	196	254	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	SUPERFAMILY	WRKY DNA-binding domain	192	255	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	ProSiteProfiles	WRKY domain profile.	191	255	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	ProSiteProfiles	WRKY domain profile.	363	428	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	SUPERFAMILY	WRKY DNA-binding domain	360	428	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	MobiDBLite	consensus disorder prediction	251	322	-	-
	Ahy6g2235	541	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	36	539	-	-
	Ahy6g2235	541	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	36	539	IPR044810	GO:0003700
	Ahy6g2235	541	MobiDBLite	consensus disorder prediction	246	347	-	-
	Ahy6g2235	541	MobiDBLite	consensus disorder prediction	327	347	-	-
	Ahy6g2235	541	MobiDBLite	consensus disorder prediction	143	219	-	-
	Ahy6g2235	541	Pfam	WRKY DNA -binding domain	197	253	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	Pfam	WRKY DNA -binding domain	369	425	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	MobiDBLite	consensus disorder prediction	143	190	-	-
	Ahy6g2235	541	Gene3D	WRKY domain	353	429	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ahy6g2235	541	Gene3D	WRKY domain	182	256	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g2235	Ahy-Chr6	104848265	104851260	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g2235	36	538	WRKY Transcription Factor Family	AT2G38470	46.490	2.31e-116	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ahy6g2235		WRKY	1.30E-23	CL0274