Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2182 ATGGTTAGTGAAGACCAAAAACGAAGCCCCAGAAACCAGAAGTACCCTGCAACTGAGGGAAATGGCCAAAGCCAAAACCTTAACGATGCCGTTTTCAGTCCGCGATTCAAATCTGCGGCAGCTATGGCCGGCTGGGACGAAGAGGCACTGCTTCTCGCAAGCCTCGTCGTTGAAGACACACCCGATAGAGATTTCAAACACAAGAAGCGCTCTGTCTTGAACTCCAAGACTCCACCCACCAATTCAAGAAGAGCACAGAGTTCTCCAGAATCGATACGAGTGGCTGTTCTTGATCTTGACGAAGAAGACACTCCAAGAAAAGATAGTGGGAAAAAGACTAAAGAAAAGAAGGCCACTGTAAACGAAGAGAGTAAAGAAGGAGGGAAGGAATCCGGTGTTGCTGCACTTCCCTGCATTGATAAGCTCAGAGACGAGCTTTCTTGCGCCATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACCCCTTGTGGTCACAGCTTTTGTAAAAAGTGCCTTCGATCTGCTGCAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGCAATGGAAGATCATGCACTGTGAACACTGTTCTCTGGAATACAATACAGCTCCTGTTTCCCCAAGAAGTTGAGGCAAGGAAAGCGGCCGGCGCCATAAATAGCCGGCAACAATCTAAGTGCCTGAGCCCAGAAGCAGCATTTTACAACAATTTAAGGAATGGTGAAAGCACAACAACCAGAGGTGGTGTCAGTACAAGGAGAAGCAGCGGTAGGGCTGCCGCAATAACTGATCAGGAAGCAAGGCGGCTCCAAGGTGTGAGATCAAGAAGAGGGATTACTCCTGCTACACAAACTGAGGATGCAGCAATTGCCCTGAGGCTGCAGAGAGAGGAGTTTATGCAGGCCTTTAGGGGAACACAGGAACAACACCATTCCAGCAGATCCTCATCTGTGGATTTAGCTAGAGAAAATTTGAGGGCAATGGCATCTAGAGCCATGAGTCTTCGCATTAGAGATCGAAGATTTTGA 1041 0.4765 MVSEDQKRSPRNQKYPATEGNGQSQNLNDAVFSPRFKSAAAMAGWDEEALLLASLVVEDTPDRDFKHKKRSVLNSKTPPTNSRRAQSSPESIRVAVLDLDEEDTPRKDSGKKTKEKKATVNEESKEGGKESGVAALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLIGNGRSCTVNTVLWNTIQLLFPQEVEARKAAGAINSRQQSKCLSPEAAFYNNLRNGESTTTRGGVSTRRSSGRAAAITDQEARRLQGVRSRRGITPATQTEDAAIALRLQREEFMQAFRGTQEQHHSSRSSSVDLARENLRAMASRAMSLRIRDRRF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2182 346 Coils Coil 346 346 - -
Ahy6g2182 346 PANTHER UNCHARACTERIZED 247 344 - -
Ahy6g2182 346 MobiDBLite consensus disorder prediction 74 89 - -
Ahy6g2182 346 ProSiteProfiles Zinc finger RING-type profile. 148 187 IPR001841 -
Ahy6g2182 346 PANTHER - 247 344 - -
Ahy6g2182 346 SUPERFAMILY RING/U-box 140 211 - -
Ahy6g2182 346 Pfam Zinc finger, C3HC4 type (RING finger) 148 186 IPR018957 GO:0046872
Ahy6g2182 346 MobiDBLite consensus disorder prediction 63 126 - -
Ahy6g2182 346 MobiDBLite consensus disorder prediction 95 126 - -
Ahy6g2182 346 PANTHER - 26 227 - -
Ahy6g2182 346 PANTHER UNCHARACTERIZED 26 227 - -
Ahy6g2182 346 SMART ring_2 148 186 IPR001841 -
Ahy6g2182 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 217 IPR013083 -
Ahy6g2182 346 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Ahy6g2182 346 MobiDBLite consensus disorder prediction 13 29 - -
Ahy6g2182 346 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2182 Ahy-Chr6 103682865 103684690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2182 72 238 C2H2 Transcription Factor Family AT5G39550 29.070 2.58e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2541 16 135387193 135389008 Ahy6g2182 6 103682865 103684690 hybridization