LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g2141	ATGCCTCCAAAGAAGAAGAACAACACTTCTTCTTCTTCTTCTTCTGCGTCCAAGAAGCATAACCCTCAACCTTCCAAGTTCGGCATCCAGCACTTCTTTGATCGCCACACACAGAACAACGCTCTCCTCGCCTCCCAAAAGCTCCAAACTAACAATGCTTCCGATTCCGCCGCTAAACCAGTTTCTGACCCTCTCCCTGCCCGAACCAGAGACCCGATTTGCAGCACCGTTGTGCAGGTGACTCCCCAACCATCGCCGCAAAAACCTAGCGACGACAAGGGTAATACAAATTATATTAGTAATAATGATAATAGAAGTAACAATGGACCGTCCCAGAATACTCCTACTGAGAAGTCGGTGGTGCCGGTTGATAATGTGATGGAAGATATTGTGTCTGAGCTGTCCCCAGATATTTCTAAAGCTATGCCGCTTAAGCGCTTCAAATTCTCACCTGGAATGTTTATAAAGCAGACTCAAGATTATGGGGTTGATGAGGTCACATGGAAGATATCTCCAGTGAACGAAAGACTCCAAGCTGTTTCTAAACATGTGCCAAATGTCATTAAAGCGTTGGCCGACTCTTCAAGACTCAACTTATTGCCATTTCGTAGCTGCTCAGAAGATAAGACTTTTCGGGATAAAGATGACAAGGTTGACGAATTGCTTACTTCACCAACTCCCAAGGCTTCTGCAAAAGCTCTACCTTCAATGAGTAAATTAGGCTTGAAAAGGATAAATCCAGAACAAAGTGTGGATTTTGACACCAATCCAATTACTCTGAGCTACTCTGGAGTATCTAGCAGACAGAGTCCCTTCAGGACTCCACCCTCTTTGTCTCATTGTCCCGATAAGGTGCATCCTATTAATGACATTCAATGCACTGGACCATCTGATCAACTTTATCTCAGACAGCACAAAAAGACTTTGCTTGAACTGTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGACGCTACTGTTTGTAACAAGGGAACTGATTCTTTAAAATGTTGTGACGGCATTGCTGATGAGCTCCCTGTTAGAGCCAACCATGCTGATGAAAGAACAAGATCACATAGATCTAAAGAGGATATGGTTGCTGACTCTAGTTATCTGGTTTTGCAGGTGTCTGAAAATTCTAGGTCTGCTGATTCATCTGCTGCTGATGCTCGATCCCCATACAAGGTGCTTCGCTTACTAAATGAGCAAACTGGAGAGGAGCGGGTTGTAAACTTGAGGGATGAGTGGTTTTTCAGTGTAATTGCACCTGGAGATACTGTAAACATAATCGGTCAATTTGATGAAGGAGGAAGTTGTGATATAGGCCATGAAAATAATTTCTTGATTGTGCACCCAGACATTCTGCTGTCTGGAACAAGGGTTGCTGGCAGTTTTGGTTGCCTTAGGAGAACTGTCTTAGATGAGAGGCTAAAATGCAATGAGTACTCTACTGCAGCATTGACTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTCACAGAAGACAATCCATCTATTGACTTCTTGGAAGGTTACACAGAAGTGGTATTACTTAGGAACATTGAGAGTCTGTATGCTTGTGGAGTAAATGAAAGTGATGTTCGGAAAACCTTGATTGATGCTGTCCCGAGAATATTGAGTTGGATTTTACGGTTCACAAATAAGGAGGAAAATGAAGATCCTAATGTTTGTTTTGGATTTCACAATAGGCCTAACAAAGTTGCCATATCTGAGGTAATTGATATTGAAGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTGACAGTACAATCAGTAAAAGATGAACTGGAGGAGAAGATTATGCCAGTAGAGTTCAAAACCGGGAAATCACCAGCTGGCCAGTCATCAGCAGAACACAATGCTCAAGTAATCTTATATACTCTTCTGATGTCTGAAAGGTATCAAAACACCATTGATTCTGGTCTTCTATATTATCTCCAATCAGATCAGACACAGGGTATTGTGGCTCAAAGATCTGACTTAGTTGGCCTAATAATGCGACGGAACGAGCTAGCAAGTGATATTCTTAAGGCATTAACCTCGCAACAACTTCCAGCAATGTTAAAGAGTCCTGGCATTTGCAAAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGTTACATGGTGGAAGCACAAAAAGCAGTGGATTGGAAGATGTATTTGATTCTCTTACTGACCACCTTACATCTTCCCATTCCAAGTTCCTCTGCCATTGGGATCGGCTGATTGACTTGGAAGCCAAGGAGACTGAGCTTTTAAGGAAAGAGATGTGGCGATCACATAGTTTAAAAGCTCCAAACTGTGGTAGCCTTTCTTCTATTGTTCTCGATGCTTCATATGGAATTCCTCATCAGAAATCTGTCAAAGATAATCGCTTTGTTTATCGTTTTGTAAGACAAGATAATTGTCCCTCTGAAGTTTCTGATGGTGATCATTGTAGTACCTATTCAACAAATTTAGATCTTACACTTGCAAGCGGAGACTATGTGATATTGAGTAATGACTCTAGTGGGCAAATTATTGCAAAAGGGGTGATCTCTGATATTAGCCAGATTCATGTATCTGTTTCCTTTTCAAAACGCTTACGAATTCCTGGAAGATGTTCCACTACACATGATCTCCTTCAACAGGTTTGGAGAATCGACAAGGATGAATTTGTGACTTCATTTGCATCTATGAGGTTTAGTCTTGCACAACTTTTTCTACAAAATGTTCGGAGTACTCATCTGCGGAGGATGATTGTTGATCTTGAGGCTCCTAGGTTTGACTGTGAATCTATAGTCAGTCAGGATCCAGCAATATCATATGTTCGGTCGAAGAAATCTTTGAATGATGATCAATGTAAAGCAATTCTCAAGATACTTGCAGCAAAAGATTATGCGCTTATATTAGGAATGCCTGGAACAGGAAAGACTTCTACGTTGGTTCATGCTGTGAAAGCCTTGCTGGAAAGGGGCTCTTCCATTTTGCTGACAGCCTATACAAACTCTGCAGTTGATAATTTACTCATGAAATTAAAAGCACAGGACATTGATTTTGTTCGGATTGGAAGACCAGAAGCAGTGCATGAGGTGGTCAGAGGACACTGCCTTTCAGCAACAAGTATACAAAATGTTGAAGATATCAAAATAAGGTTAGGTCAAGTCAGAGTTGTTGCAGTTACTTGTCTTGGCATTTCCAGTCCCTTGCTTGCCAACATGAGATTTGATGTATGCATTATGGATGAAGCTGGACAGACAACCTTACCTGTGTCCTTGGGCCCCCTAGCATTTGCTTCAGTGTTTGTACTTGTTGGGGATCATTATCAATTGCCTCCACTTGTCCAGAGCATAGAGGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGGCTCTCCGAAACACATCCAGAGGCAATTGCGGAATTACGGAGCCAGTACCGGATGCGTCAAGGCATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGGTTGAGGTGTGGTTCATCTGAAATAGCTAATGCAACACTTGAGTTTTCTAATCTAAACTGTGGCTTGACTTGGCTAGAAGATGTTTTAAATCCAAGCAGGCCAGTGATTTTTATTGATACTGACATGTTACCCGCTTTGGAGGTAAGAGATCAGAAGACTGTCAATAATCCAGTTGAAGCTCACATAATTGCCGAGGTTGCAACGGAATTGGTTAGAAATGGAATTGTAGGAGAGCAGATTGGTGTTATTACCCCCTATAATTCACAGGCAAACCTCATCCGGAAAGCAGCTTCCGAGACTACCATGGAGATACATACCATTGACAAATATCAGGGTAGAGATAAGGATTGCATATTAGTCTCTTTCGTAAGATCTAGTGAAAACCCAACGAACCTTGCTGCTTCTCTTCTCGGAGACTGGCACAGGATAAATGTGGCACTCACTCGCGCTAGGAAAAAGTTGATCATGGTGGGGTCTCGTAGAACTCTTTCAAAGGTTCTGCTACTGAAACTTCTCATTAAGAACGTTGAGGAACAATGTGGAATTATAAGTGTTTCGAAGAAGGATATCGTTCCAAAAGGTCAGCTCCGAAAATGTTCTCAAATGGGTTGA	4146	0.4197	MPPKKKNNTSSSSSSASKKHNPQPSKFGIQHFFDRHTQNNALLASQKLQTNNASDSAAKPVSDPLPARTRDPICSTVVQVTPQPSPQKPSDDKGNTNYISNNDNRSNNGPSQNTPTEKSVVPVDNVMEDIVSELSPDISKAMPLKRFKFSPGMFIKQTQDYGVDEVTWKISPVNERLQAVSKHVPNVIKALADSSRLNLLPFRSCSEDKTFRDKDDKVDELLTSPTPKASAKALPSMSKLGLKRINPEQSVDFDTNPITLSYSGVSSRQSPFRTPPSLSHCPDKVHPINDIQCTGPSDQLYLRQHKKTLLELLDQVEDAIAVDDATVCNKGTDSLKCCDGIADELPVRANHADERTRSHRSKEDMVADSSYLVLQVSENSRSADSSAADARSPYKVLRLLNEQTGEERVVNLRDEWFFSVIAPGDTVNIIGQFDEGGSCDIGHENNFLIVHPDILLSGTRVAGSFGCLRRTVLDERLKCNEYSTAALTGTLLHQIFQAGLTEDNPSIDFLEGYTEVVLLRNIESLYACGVNESDVRKTLIDAVPRILSWILRFTNKEENEDPNVCFGFHNRPNKVAISEVIDIEEMAWAPKYGLKGMIDASVRVTVQSVKDELEEKIMPVEFKTGKSPAGQSSAEHNAQVILYTLLMSERYQNTIDSGLLYYLQSDQTQGIVAQRSDLVGLIMRRNELASDILKALTSQQLPAMLKSPGICKGCRHLNVCSIYHKLHGGSTKSSGLEDVFDSLTDHLTSSHSKFLCHWDRLIDLEAKETELLRKEMWRSHSLKAPNCGSLSSIVLDASYGIPHQKSVKDNRFVYRFVRQDNCPSEVSDGDHCSTYSTNLDLTLASGDYVILSNDSSGQIIAKGVISDISQIHVSVSFSKRLRIPGRCSTTHDLLQQVWRIDKDEFVTSFASMRFSLAQLFLQNVRSTHLRRMIVDLEAPRFDCESIVSQDPAISYVRSKKSLNDDQCKAILKILAAKDYALILGMPGTGKTSTLVHAVKALLERGSSILLTAYTNSAVDNLLMKLKAQDIDFVRIGRPEAVHEVVRGHCLSATSIQNVEDIKIRLGQVRVVAVTCLGISSPLLANMRFDVCIMDEAGQTTLPVSLGPLAFASVFVLVGDHYQLPPLVQSIEARENGMGISLFCRLSETHPEAIAELRSQYRMRQGIMDLSNALIYGDRLRCGSSEIANATLEFSNLNCGLTWLEDVLNPSRPVIFIDTDMLPALEVRDQKTVNNPVEAHIIAEVATELVRNGIVGEQIGVITPYNSQANLIRKAASETTMEIHTIDKYQGRDKDCILVSFVRSSENPTNLAASLLGDWHRINVALTRARKKLIMVGSRRTLSKVLLLKLLIKNVEEQCGIISVSKKDIVPKGQLRKCSQMG*	1382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g2141	1381	MobiDBLite	consensus disorder prediction	32	58	-	-
	Ahy6g2141	1381	Pfam	Domain of unknown function DUF83	607	721	IPR022765	-
	Ahy6g2141	1381	Gene3D	-	890	1159	IPR027417	-
	Ahy6g2141	1381	MobiDBLite	consensus disorder prediction	74	118	-	-
	Ahy6g2141	1381	Pfam	DNA replication factor Dna2	402	604	IPR014808	-
	Ahy6g2141	1381	CDD	SF1_C_Upf1	1162	1340	IPR041679	-
	Ahy6g2141	1381	Pfam	AAA domain	1139	1338	IPR041679	-
	Ahy6g2141	1381	PANTHER	DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2	228	1356	IPR026851	GO:0017108\|GO:0017116\|GO:0033567
	Ahy6g2141	1381	CDD	DEXXQc_DNA2	961	1161	-	-
	Ahy6g2141	1381	MobiDBLite	consensus disorder prediction	1	24	-	-
	Ahy6g2141	1381	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	960	1345	IPR027417	-
	Ahy6g2141	1381	PANTHER	DNA2/NAM7 HELICASE FAMILY	228	1356	IPR045055	-
	Ahy6g2141	1381	Gene3D	-	457	721	IPR011604	-
	Ahy6g2141	1381	Gene3D	-	1160	1367	IPR027417	-
	Ahy6g2141	1381	MobiDBLite	consensus disorder prediction	1	118	-	-
	Ahy6g2141	1381	Pfam	AAA domain	1065	1129	IPR041677	GO:0004386
	Ahy6g2141	1381	Pfam	AAA domain	962	1052	IPR041677	GO:0004386

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g2141	Ahy-Chr6	102813643	102831144	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g2141	1	1103	Core DNA Replication Machinery Family	AT1G08840	52.716	0.0	1066

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy6g2141	K10742		-	gmx:100799415	1714.89