Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2140 ATGGCGGGAGAGAACACTATGAAGCAAAGGCCTCTTCCTGTTCCGTCTTCTTCTCCGTCAATGAGAGCGAAAATGGAGGAAACAACAAAGGAAAAATGCTGGAGAATGGAAGTCGACGAGAATCTGAAGCGCCTCCAGTCCCTTCAGTTCGGCGTCGACCACGCCCTCACCACCCAGGACTTTTCCTCCGCCTATGTCCTCGGCCTCCGCCTCCTCGGCTTCCTCGACTCCCACTCCCATTCCGACGTCGACGAAGCCTTCATCCACCCTATTCGCCGCCAAACCCTCTCCACTCTTGCCTCCGCTCGCCGTTCCCTCACTCCTGATTCCGATCGTCTAGCTTTTGAACAAGCAAAGAAGCCTCAGGGACGCGTTTTTGCCACATCAGGTGAAATTGACATTGACAAGATCCGCAAGTCGAAGTACTTTCGAGCTCTTCTCGCGCAATCTAATGAAATTGACGAGAATCAGTTGGGTGAACAAATTGGGAAGCAAGACGGATCGTGCGAGAAGCCGTCAAAGGAAATGCTGCAAGCGAAGCTGACGTCAGCGTATGGGAAGAGTGCATTGAGGAATGATAATGCTACGAAGAACTTCTTCAATTTGAAGGATAATTGCTCTGAGGAATGCGTTGTTGTTGAGAGGCCTCAATTTCAGAACAGCCATACAAAGGGTTCTACTATTTCTTCTTTCTTGCAGGTTGAAGAGGAAGAAAGAATGAACTCGTTTGGGAAGAAACGTGTGCATATGGAAATTAATAATAGTCCCAAAGTTGGTTATTCGAGGTCACCTTCAAGCAAAGAGGATGTTAACCCTGAAGTTTCTGGCAATGGATTTGTTACTGCTAGAGCCAAATTGGAAATGGAAGCAAGGCAAAAGAGAGGGGCAGTTGGTTCACCCAATGCACCTGTATCCCCACAAGGCGATAATAATCCTTCCAATAGGTTATGTAGTGGGAGATCGTATGGCATTTCACGACGTGGCTTCCGTGGTAATTTTGTCCCACCCATTAAATCCAATGGGAGTAATGTTGGAAATGTGACTTCACGAATTGCTGGAAAGGGAGATGATTCTCTAGATGATTCTACCAAAAGATGTTTGGAAATGCTGTGTGGGCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATCGAGCATGTTAGTAATGAGATTATGGATAGAGATCCTAATGTCCGTTGGGATGACATTGCTGGGTTGGAGCATGCCAAGAAATGTGTAACTGAAATGGTTATATGGCCTCTGCTACGTCCAGACATATTTAAGGGATGCCGGTCACCTGGTAGGGGTTTGCTCTTATTTGGTCCACCGGGAACTGGTAAAACGATGATAGGCAAAGCAATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCATTGACAAGCAAGTGGATTGGTGAAGGCGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAGATAGATTCACTCCTCTCTCAGCGCAAGTCAGATGGTGAGCATGAATCAAGTAGAAGGCTTAAGACACAATTTCTCATAGAAATGGAAGGCTTTGATAGTGGCAGCGAACAGATTCTACTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCAAGAAGGAGACTTACCAAAAGACTATATATCCCCCTACCCTCCTCAGAAGCTAGAGCTTGGATTATACGTAACCTACTAGAGAAAGATGGATTATTCAGTCTATCAAGGGAGGAAATAGATATCATATGTAACATAACCGAAGGTTATTCAGGATCTGACATGAAAAACTTAGTGAAGGATGCATCTATGGGTCCCCTAAGAGAGGCCCTAAAACAGGGTATAGAAATTTCAAAGTTGAAGAAGGAGGATATGAGACCAGTAACCCTTCAGGACTTCGAGAATGCCCTAAAAGAAGTGAGGCCTTCTGTTTCCACTAACGAACTTGGCACCTACGATGAATGGAACAACCAGTTTGGAAGCCTATCACGGTAG 2052 0.4581 MAGENTMKQRPLPVPSSSPSMRAKMEETTKEKCWRMEVDENLKRLQSLQFGVDHALTTQDFSSAYVLGLRLLGFLDSHSHSDVDEAFIHPIRRQTLSTLASARRSLTPDSDRLAFEQAKKPQGRVFATSGEIDIDKIRKSKYFRALLAQSNEIDENQLGEQIGKQDGSCEKPSKEMLQAKLTSAYGKSALRNDNATKNFFNLKDNCSEECVVVERPQFQNSHTKGSTISSFLQVEEEERMNSFGKKRVHMEINNSPKVGYSRSPSSKEDVNPEVSGNGFVTARAKLEMEARQKRGAVGSPNAPVSPQGDNNPSNRLCSGRSYGISRRGFRGNFVPPIKSNGSNVGNVTSRIAGKGDDSLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFSLSREEIDIICNITEGYSGSDMKNLVKDASMGPLREALKQGIEISKLKKEDMRPVTLQDFENALKEVRPSVSTNELGTYDEWNNQFGSLSR* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2140 683 Gene3D - 573 659 - -
Ahy6g2140 683 ProSitePatterns AAA-protein family signature. 544 563 IPR003960 GO:0005524|GO:0016887
Ahy6g2140 683 PANTHER FIDGETIN-LIKE PROTEIN 1 90 680 - -
Ahy6g2140 683 MobiDBLite consensus disorder prediction 291 315 - -
Ahy6g2140 683 MobiDBLite consensus disorder prediction 1 24 - -
Ahy6g2140 683 CDD AAA 435 572 - -
Ahy6g2140 683 PANTHER AAA DOMAIN-CONTAINING 90 680 - -
Ahy6g2140 683 Gene3D - 401 675 IPR027417 -
Ahy6g2140 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 678 IPR027417 -
Ahy6g2140 683 Pfam Vps4 C terminal oligomerisation domain 645 679 IPR015415 -
Ahy6g2140 683 MobiDBLite consensus disorder prediction 256 272 - -
Ahy6g2140 683 SMART AAA_5 438 574 IPR003593 -
Ahy6g2140 683 Pfam ATPase family associated with various cellular activities (AAA) 442 572 IPR003959 GO:0005524|GO:0016887
Ahy6g2140 683 MobiDBLite consensus disorder prediction 254 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2140 Ahy-Chr6 102790676 102796308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2140 357 681 Calmodulin-binding Proteins AT3G56690 31.563 8.79e-42 161