Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2028 ATGTTGGGTTTCTGCAACGCCACGAAAGTTGTTCTCCACCTTCGTCAAAACCTTTCCGTTTGGGGCGTGCGTGCACGAAATATAAACATAGGAGGTGGTGTTGGAGGTGAAATCCCTGACCAGAAACGCCTCCAGTATGCTCTTCAGCATATCCATGGCATTGGGCGTTCCAAGGCTCATCACATTGTCTGCGAGCTCGGTGTTGAAAACAAATATGTTAGAGACCTTAGCAAGAGAGAGTTGTACTCCCTTCGCGAATTGCTTTCCAAGTACTTGATTGGGAATGATTTGAAAAAATGTGTTGAAAGAGATGTGGGGAGGTTGGTGGGCATTCAGTGCTACAGAGGCATCAGGCATGTCGATGGCTTACCCTGTCGAGGCCAGCGAACTCATACCAATGCCCGCACCAGGAAGAGCAGGCCTACTTGGAGGGGAACAAGATGA 444 0.491 MLGFCNATKVVLHLRQNLSVWGVRARNINIGGGVGGEIPDQKRLQYALQHIHGIGRSKAHHIVCELGVENKYVRDLSKRELYSLRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDGLPCRGQRTHTNARTRKSRPTWRGTR* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2028 147 ProSiteProfiles Ribosomal protein S13 family profile. 34 139 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy6g2028 147 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 9 142 - -
Ahy6g2028 147 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 9 142 - -
Ahy6g2028 147 ProSitePatterns Ribosomal protein S13 signature. 115 128 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy6g2028 147 Hamap 30S ribosomal protein S13 [rpsM]. 24 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ahy6g2028 147 Gene3D - 34 98 - -
Ahy6g2028 147 SUPERFAMILY S13-like H2TH domain 35 139 IPR010979 GO:0003676
Ahy6g2028 147 MobiDBLite consensus disorder prediction 128 147 - -
Ahy6g2028 147 Gene3D 30s ribosomal protein s13, domain 2 99 138 IPR027437 -
Ahy6g2028 147 MobiDBLite consensus disorder prediction 131 147 - -
Ahy6g2028 147 Pfam Ribosomal protein S13/S18 35 136 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2028 Ahy-Chr6 98985002 98988568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2028 23 139 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.369 4.61e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2028 K02952 - gmx:100527465 231.876