Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2020 TATAGGTATCATCAAATCAAAGAGAAGAAGGTAAGTAAGGAAGCTAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCTTCCTTCTGATTCTAGATCAGAAGAGAAAAGAAGAGAAGAAGATGATTGTTTTCTCCACAACGTTCCTCTTCAGCCACCTTCACAATCTGAAATCCAACAACAAGAAGAGGAAGAACCTTCACCAAATCTTCAAATAGTTCAGCTCCAAGACCAAGGCAAGAAGGATGTGAGAAAACGACATTATAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCCGAAATCAGAGACCCTAAAAAGGCGGCGAGAGTTTGGTTAGGAACCTTTGACACTGCAGAAGCCGCAGCAGCAGCTTACGATTCTGCGGCCTTAAAATTTAAAGGTAACAAAGCCAAACTCAATTTTCCTGAGCGCGTTGCCGCTTCCAATTCCGCTTCAACAACTTATCATCACTCTTCACAACCACCACCTACTATGGTGTATCGACCTTCTTCACAACCTTATACTCCATTAATGCCGCCGCCGCCGTCCTCCTCCACATCGGAGGAAGGAGGATTTCCAAACCTCATGCAATATGCGCAGTTGCTTTGGAGTAGAGACGATGATGATCTACGACGTGCAGCTTCAGGGCTTTATCATAATAATAATAATAATAATAATAATAATAACAATTTTTCTTCATATGGTTCTGTAATGAATTCATCATCAGGGTTGTCTTCTTCTTCTACTACTTCAGATTCTGCGGTTGTGATGACTGGTCAACTCCATAGCATGATGGGTGCACCACCACGACCACCCAAGGGAGATTATGATTATTATTTTGGTCAAGGGACTGATTTTGATGGCAGGAATTGA 879 0.4312 YRYHQIKEKKVSKEAKVDRRHGKRPLLPSDSRSEEKRREEDDCFLHNVPLQPPSQSEIQQQEEEEPSPNLQIVQLQDQGKKDVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVAASNSASTTYHHSSQPPPTMVYRPSSQPYTPLMPPPPSSSTSEEGGFPNLMQYAQLLWSRDDDDLRRAASGLYHNNNNNNNNNNNFSSYGSVMNSSSGLSSSSTTSDSAVVMTGQLHSMMGAPPRPPKGDYDYYFGQGTDFDGRN* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2020 292 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Ahy6g2020 292 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Ahy6g2020 292 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Ahy6g2020 292 MobiDBLite consensus disorder prediction 1 89 - -
Ahy6g2020 292 MobiDBLite consensus disorder prediction 217 292 - -
Ahy6g2020 292 MobiDBLite consensus disorder prediction 152 193 - -
Ahy6g2020 292 MobiDBLite consensus disorder prediction 49 76 - -
Ahy6g2020 292 PANTHER DNA-BINDING DOMAIN 78 257 IPR044808 GO:0003700|GO:0009873
Ahy6g2020 292 MobiDBLite consensus disorder prediction 1 45 - -
Ahy6g2020 292 MobiDBLite consensus disorder prediction 168 185 - -
Ahy6g2020 292 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Ahy6g2020 292 MobiDBLite consensus disorder prediction 152 167 - -
Ahy6g2020 292 MobiDBLite consensus disorder prediction 218 260 - -
Ahy6g2020 292 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Ahy6g2020 292 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 78 257 - -
Ahy6g2020 292 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Ahy6g2020 292 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
Ahy6g2020 292 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2020 Ahy-Chr6 98737106 98739381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2020 68 164 AP2-EREBP Transcription Factor Family AT5G61890 72.449 3.80e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g2020 AP2 2.90E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2020 - - ahf:112754987 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2352 16 129566496 129568914 Ahy6g2020 6 98737106 98739381 hybridization