Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g2003 ATGAATACTTTTACGTCGTCATCGTCGCAGTCGCCAAGGTCAAAAAAGAAGCAAACTAAGCCGGCCGCGCAGCCGCAAGAGCAGCAGCAACACGAGACAGCATGGGGAGGAAGGTACCTCGGGGTGAGGAGGAGGCCATGGGGGAGGTATGCGGCCGAGATTCGCGACCCTTCCACTAAGGAAAGGCATTGGTTAGGCACGTTTGACACTGCAGAAGAAGCTGCCCTGGCATATGACAGGGCAGCTCGCTCCATGCGTGGCTCACGTGCCCGAACCAACTTCGTCTACCCGGACACTCCTCCAGGCCTATCCGTCACCCCAATCTTGTCACCCGACCAACTCCAACCCCAAACTTATAACCACCACAACCATGTCCATGACTTGTCCTCAATCTTCACCTCTAACTCCACCTCGACTCATCAACACCTTGACTCAGATCCAACTCTAGACCCAGTTACGTTGTTGGTTGGCGCCAACAACAATTGGAGCTATAATAATACCTACGGCTATAGCGGTGGCGATCACCAAAACAGTAGCAACGACGGTTACTACAACAGTAATAGCTATGCCGACCAAGGTTGTCCAAATTTGGGGCACGTTTTTGTTGAAGAGGGTGGAACTAGCAATAGCAATAGCAACAGTAGTGCTTCCACAGTTGAGCTACCTCCATTGCCACCTGATATCACAAGCTCCATTGGTTATAATAACATGGATAATCATGATCATGGTTTTGATTATTATCACAATATGACTACTGGGGATTATGTTCAAAGTCCAATGTTCAATGCAATGCCAACGGTTTCGGAGAATGTGGCTGGAGCTGATGGTTTTGAATTGGGGGGTTCCTCTTATTTCTTCTGA 861 0.4925 MNTFTSSSSQSPRSKKKQTKPAAQPQEQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGLSVTPILSPDQLQPQTYNHHNHVHDLSSIFTSNSTSTHQHLDSDPTLDPVTLLVGANNNWSYNNTYGYSGGDHQNSSNDGYYNSNSYADQGCPNLGHVFVEEGGTSNSNSNSSASTVELPPLPPDITSSIGYNNMDNHDHGFDYYHNMTTGDYVQSPMFNAMPTVSENVAGADGFELGGSSYFF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g2003 286 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Ahy6g2003 286 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Ahy6g2003 286 MobiDBLite consensus disorder prediction 1 37 - -
Ahy6g2003 286 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Ahy6g2003 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 4 286 - -
Ahy6g2003 286 MobiDBLite consensus disorder prediction 1 33 - -
Ahy6g2003 286 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 286 - -
Ahy6g2003 286 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Ahy6g2003 286 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Ahy6g2003 286 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Ahy6g2003 286 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Ahy6g2003 286 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g2003 Ahy-Chr6 98121807 98123231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g2003 26 282 AP2-EREBP Transcription Factor Family AT5G13910 42.692 1.27e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy6g2003 AP2 1.90E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g2003 K09286 - gmx:100809600 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2329 16 128674991 128676446 Ahy6g2003 6 98121807 98123231 hybridization