Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1998 ATGAGTTTCCAAGATATCCAAGGCGGCCCTAACGCAGCCGTGCGAAGAAGCCAGTCTCCGTTGCAGGCCATCGCCGCCGGAATCTTCCAGATCAACACTTCCGTCGCCACTTTCCGCCGCCTCGTTGATTCTCTTGGAACCGTTAAAGACACTCCCGACCACCGCCAGAAGCTGCACAACACGAGACAGAGGATATTGAAGCTGGTGAAGGATATTTCTGCTAAGCTCAAGTCGTTGAGTGAATCTGATCGCCATGCTTCTGGTGCTAATGCTAACAAGAAAATTGAAGATGCTAAGCTAGCAAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAGGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACCCCTACTACTGCCCCTCCGCCCTCTTTTCCAACAAGCTCTGGCTCTGGTGAAGAATCCGGTGAGAGAGACCAGGAAAGCCAACCTTTTATGAGGGAGCAAAGAAGGCAAGAGGTACTTCTCTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGTATTAGAGAGGTAGAAGAACAAATCGGACAAGCAAATGACATATTCAAGGACCTGGCTGTCCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGATAATTCCTCTGCTGCAACAACCCAAGCGAGAGTTCAGTTAGCAAAAGCTTCCAAAAGTGTGAAATCTAGAACCTCATGGTGTTGGTGGGCGCTTGTAATTTTTGTGGTGATTGTGGTGATCATACTTGTTGTACTGATTATTTAG 807 0.4721 MSFQDIQGGPNAAVRRSQSPLQAIAAGIFQINTSVATFRRLVDSLGTVKDTPDHRQKLHNTRQRILKLVKDISAKLKSLSESDRHASGANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPTTAPPPSFPTSSGSGEESGERDQESQPFMREQRRQEVLLLDNEISFNEAMIEEREQGIREVEEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDNSSAATTQARVQLAKASKSVKSRTSWCWWALVIFVVIVVIILVVLII* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1998 268 SMART tSNARE_6 170 237 IPR000727 -
Ahy6g1998 268 Gene3D - 169 268 - -
Ahy6g1998 268 MobiDBLite consensus disorder prediction 113 157 - -
Ahy6g1998 268 MobiDBLite consensus disorder prediction 113 128 - -
Ahy6g1998 268 SUPERFAMILY t-snare proteins 19 230 IPR010989 GO:0016020|GO:0016192
Ahy6g1998 268 SMART SynN_4 8 123 IPR006011 GO:0016020
Ahy6g1998 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Ahy6g1998 268 PANTHER SYNTAXIN-22-LIKE 16 267 - -
Ahy6g1998 268 Gene3D - 11 129 - -
Ahy6g1998 268 Pfam SNARE domain 212 263 IPR000727 -
Ahy6g1998 268 CDD SNARE_Qa 178 236 - -
Ahy6g1998 268 Pfam Syntaxin-like protein 24 125 IPR006011 GO:0016020
Ahy6g1998 268 PANTHER SYNTAXIN 16 267 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1998 Ahy-Chr6 97845689 97848411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1998 1 255 SNARE and Associated Proteins AT5G46860 58.301 1.00e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1998 - K08488 aip:107604899 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2326 16 128428253 128430902 Ahy6g1998 6 97845689 97848411 hybridization