Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1824 ATGATGATGAGCTCACAGCACTTCAATAATGGTGGAAGTGATGGTGGTGGTAGGTTCTTCCCTTCACTCCCTGTTCCTCCTTCTTCTTTTCCCCTTGTTGTTCCTCCTCCTCCACCTTCTCTGTCCAACACTTCAGGGGTTGTTGTGATGGGTCATCATCATCATCATCATGCAAATGGGGTAGAGGATCCTGAACTTATCATGATGGGGCTTCAGATTTTGAGCTCTTCAAAGTGGAAAATGGGAACCAACAACAACAGTGAAAACAAGAGCTTGTCTTTGAAGATTGGCGACGAGGAAGATGAAATAGATGGAGGAGAAGAAAGAGAAGAAGGTAATAATAAAGGGCCTTGTTCTTCTTCTTCCAATGGAGGAAAAATTGGGCATGTGAAACTCTGTGCTAGAGGCCATTGGAGACCTGCTGAAGATGCACAACTCAAGGCCCTTGTTTCTCAATATGGCCCTCAAAACTGGAACCTCATTGCAGAACATCTCAAAGGAAGATCAGGTAAGAGTTGTAGACTAAGGTGGTTTAATCAGCTAGATCCAAGAATTAACAGAAGAGCTTTCTGTGAAGAAGAAGAGGAGAGACTCTTAACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCAAGACTGTTCCCTGGAAGAACAGATAATGCAGTCAAGAATCACTGGCATGTGATCATGGCTCGAAAGCAGAGAGAGCAATCAAGCATGTATAGAAGGAGAAAACCTACTCCTGTGTTTTCTCCTCCTTCTGTTGAAGAAGAAGGTGGTGTTCTTCTTCCTCCACCCAAGGCTTTGGAATTGACTCTATCATCAAACAATAATAATGTAGCCAGTGATGATCAGTTAACTATCTCAGATGAATCTGTCTCAACAGAACTAACTGCTCCTACTTCATTTTTTCATAAGATTGGTGAAGGTGTGGGTGGAATGAATGTAGGTTATGAGAAATTCTATGGTGGTTGGAATAATGGAAAACTTAAGTGTGTGGACCAATCAAATTTTTCAGAATCAAATAACTCATCATCAGAAGTCTCAGTATCTGAGTCAGTAGGCACCACCAATAGGTCCTATCTCTCAATTTCTGGAAAGAGTGAAAACCATAACATCAGGAACAAGATTAACAACATGCCAGCATTCATTGATTTTCTTGGGGTTGGAGCTACATAA 1185 0.4169 MMMSSQHFNNGGSDGGGRFFPSLPVPPSSFPLVVPPPPPSLSNTSGVVVMGHHHHHHANGVEDPELIMMGLQILSSSKWKMGTNNNSENKSLSLKIGDEEDEIDGGEEREEGNNKGPCSSSSNGGKIGHVKLCARGHWRPAEDAQLKALVSQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFCEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSSMYRRRKPTPVFSPPSVEEEGGVLLPPPKALELTLSSNNNNVASDDQLTISDESVSTELTAPTSFFHKIGEGVGGMNVGYEKFYGGWNNGKLKCVDQSNFSESNNSSSEVSVSESVGTTNRSYLSISGKSENHNIRNKINNMPAFIDFLGVGAT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1824 394 CDD SANT 138 179 IPR001005 -
Ahy6g1824 394 Pfam Myb-like DNA-binding domain 135 181 IPR001005 -
Ahy6g1824 394 Pfam Myb-like DNA-binding domain 188 230 IPR001005 -
Ahy6g1824 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 181 IPR017930 -
Ahy6g1824 394 Gene3D - 135 186 - -
Ahy6g1824 394 SMART sant 134 183 IPR001005 -
Ahy6g1824 394 SMART sant 186 234 IPR001005 -
Ahy6g1824 394 MobiDBLite consensus disorder prediction 239 261 - -
Ahy6g1824 394 MobiDBLite consensus disorder prediction 80 123 - -
Ahy6g1824 394 CDD SANT 192 229 IPR001005 -
Ahy6g1824 394 PANTHER OS08G0435700 PROTEIN 84 394 - -
Ahy6g1824 394 SUPERFAMILY Homeodomain-like 135 228 IPR009057 -
Ahy6g1824 394 Gene3D - 189 247 - -
Ahy6g1824 394 PANTHER MYB PROTEIN-RELATED 84 394 - -
Ahy6g1824 394 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Ahy6g1824 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 236 IPR017930 -
Ahy6g1824 394 MobiDBLite consensus disorder prediction 1 22 - -
Ahy6g1824 394 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1824 Ahy-Chr6 88978718 88980878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1824 134 394 MYB Transcription Factor Family AT1G69560 50.000 1.16e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy6g1824 Myb_DNA-binding 2.60E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1824 K09422 - twl:119996400 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2116 16 118081324 118083593 Ahy6g1824 6 88978718 88980878 hybridization