LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g1798	ATGGCGACAAGAAAGGAAGAAGAGAGGAACGAGAAAATCATCAGAGGTCTTATGAAGCTTCCGCCCAATCGAAAATGCATCAACTGTAACAGTCTGGGCCCGCAATATGTTTGTACCAACTTTTGGACCTTCGTTTGCATGACTTGCAGTGGAATCCATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACATCACAGGAAGTTGATTCTCTTCAGAATGCGGGTAACCAGCGTGCACGGGAAATATATTTGAAAAATTGGGACTTCCAGAGGCAACGGCTGCCAGATAGCAGCAATGTCGATAAAATAAGGGAGTTTATAAGGCACGTATACGTCGATCGAAGATATGCTGCAACCAAATCTTCTGACAAGCCTCCAAGAGATATGCAGAACCCTAGAATCAATGAAGATGATACACGGCGTGCTAGTTCTTATCACTCCTATTCACAAAGCCCTCCATATGATTACCAATATGAAGATCGACGGTATGGGAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATGAGTAGTATTATCTATAGTCCTGGACGCTTCAGTGATCATGCCTATGAGGATAGATTTGCCAATGAGGGATCTGGTCCGAGAATTTCTGACTTTTCTGTGTCCAGTGGGGGTGAGCAATTCAAATCTGAGGTTCAGTCTCCCAACTTTCATAAGGATATTGGATTTCATAGTCCACCCTATCGGCATTCAGGTCACCATTCAAGTGAAGATGTCTGGGCTTTTGCAAGGAATACATCTCTGGAAACTAATGCTAAGAGAGATATGGAAGGAATTCGGCTTCCGCAGAGGACTGCTTCACTGGGATCAATGGACAGCAACCTGTCATCTTTTAGATCTCACAATTCTGGTGGTTTAGTTGATTTTTTCTCTGAACCTGTCCAAGCTTTTGAACCGCTACAGACTAAAGTTTCTTGTGTTCCCCAACCACCTGGTCCAGCAGGTTCTACTAGCTCTGATATTTCCAACACACCTGTTGCAGCAGAACCATCCATTGATCTTTTTCAGTTGCCAGGAGCACCCTCTCAGTCTACATCAGTGGATCTGTTTCAATCAGCTGTTTTGTCTGCAGTTCCATATTCCAATGAGAGTCAACCAACACAAACTTCCCAACCTTCATCAGTTGACTTTTTTGCAAACCTTTCTCAGCAGCCATCAACTGCAACCTCAGATGAAAAGTCATTGGAGTTATCTGCCCCTAAAAATGAAGGTTGGGCAACATTTGATATGCCTCAGTACACAGCATCTACTGCAAAAGTTGAAACTCCAGCAGTACTGCCATCAGCTGCTGACACATTGCAGGACAGATTTGATCCATTCTTGAACTTGAATGGAAATATGCAATGGCCTTCATTTGAAACTTCTGGTGTTAGTGTTCCTTCTTCAGTTACATCTAATGTATGGCATGATGGTGCATGGAATGGAGAAGAACAAGTTTCTGTGACAGCAACAAGCACTCAATCTGAACAGCCTTGGAGTGCATTTGAAGATTCTGTTACCCCGGCTTCTGCAGATGGCCTTAATCAGGGATTACAACTGCAAAATCTTCCATCAACTGATGATCAATGTTTAGATTTAAGAGCTTCTGAGGGGTGCAATGAAGGTGGGATGCAAGGCATTGCCCCTATTGGCGGGTTTGATGATCATGAAATCTCATCAAATTTTAGTGGTGGCTCAGCTTATCCTCCCTCTGCAATTCCCCCTATGGGAGAGAGTCAACCTAATGGAAACAGTCATAAATCAACTAATCCATTTGATTTTCTTGATGATGCTGATGTATCAGATGTAGAGCACAGTAATATGTTTCTTGATCTTAGCTCATTGCAAGCTGCTCTGCCCGATGCACAGTTACAACCTACTTTCCATAGCGGTATTGCCGAACCATGGCTTCCTCAAAATTCAGTTAACTCCTACATCTCCTCTGCTGGACAAGGTGGTGGTTTGACATTCTTGGCTGCTCAACCACCAAGTTCTCAAATATCGAATATCCAGACGCAGGAACCGGTTGCATCTTTTGGGGGAAATCCTTTTGCATAA	2103	0.4356	MATRKEEERNEKIIRGLMKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDSLQNAGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRHVYVDRRYAATKSSDKPPRDMQNPRINEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDHAYEDRFANEGSGPRISDFSVSSGGEQFKSEVQSPNFHKDIGFHSPPYRHSGHHSSEDVWAFARNTSLETNAKRDMEGIRLPQRTASLGSMDSNLSSFRSHNSGGLVDFFSEPVQAFEPLQTKVSCVPQPPGPAGSTSSDISNTPVAAEPSIDLFQLPGAPSQSTSVDLFQSAVLSAVPYSNESQPTQTSQPSSVDFFANLSQQPSTATSDEKSLELSAPKNEGWATFDMPQYTASTAKVETPAVLPSAADTLQDRFDPFLNLNGNMQWPSFETSGVSVPSSVTSNVWHDGAWNGEEQVSVTATSTQSEQPWSAFEDSVTPASADGLNQGLQLQNLPSTDDQCLDLRASEGCNEGGMQGIAPIGGFDDHEISSNFSGGSAYPPSAIPPMGESQPNGNSHKSTNPFDFLDDADVSDVEHSNMFLDLSSLQAALPDAQLQPTFHSGIAEPWLPQNSVNSYISSAGQGGGLTFLAAQPPSSQISNIQTQEPVASFGGNPFA*	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g1798	700	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	11	129	IPR001164	GO:0005096
	Ahy6g1798	700	MobiDBLite	consensus disorder prediction	122	148	-	-
	Ahy6g1798	700	Pfam	Putative GTPase activating protein for Arf	12	123	IPR001164	GO:0005096
	Ahy6g1798	700	CDD	ArfGap_AGFG	11	123	-	-
	Ahy6g1798	700	Gene3D	Arf GTPase activating protein	1	132	IPR038508	-
	Ahy6g1798	700	PRINTS	HIV Rev interacting protein signature	42	59	IPR001164	GO:0005096
	Ahy6g1798	700	PRINTS	HIV Rev interacting protein signature	23	42	IPR001164	GO:0005096
	Ahy6g1798	700	PRINTS	HIV Rev interacting protein signature	60	81	IPR001164	GO:0005096
	Ahy6g1798	700	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED	1	700	-	-
	Ahy6g1798	700	SMART	arf_gap_3	11	129	IPR001164	GO:0005096
	Ahy6g1798	700	PANTHER	ARFGAP/RECO-RELATED	1	700	IPR044820	GO:0005096
	Ahy6g1798	700	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	122	IPR037278	-
	Ahy6g1798	700	MobiDBLite	consensus disorder prediction	122	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g1798	Ahy-Chr6	87825044	87832131	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g1798	14	116	C2H2 Transcription Factor Family	AT4G05330	34.211	1.08e-11	65.1