Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1770 ATGGGCAAGAAGCGGAAGGTTGCACCCAAATCATCTCAAACCGTTGAGCCCCCGCCCAAGCAGCACCAACCTGAACCTCAACAGGAATACGAAGAGGTTGAGGAAGAGGTAGAAGAAGAGGTCGAAGAAGAGGAGGAGGTAGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAACAAGAAGGAGGTAACGAACAAAAGCAACAACAAGAGGACGAAGACGACGACCCCATTCCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAGTCTTCTCTGCGAAGCGGCCGCCAAGCACCGCGACGTGGCCGATCGAATCCGTCGCGTGGCCGACGAGGACGCTGTCCACCGGAAGATCTTCGTCCACGGCCTTGGCTGGGACACCACCGCCGAGACCCTCATCAGTGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCCAAGGGCTACGGATTCATCCTCTTCAAGACCCGCCGCGGCGCCCGCAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCACCTCGTCAGGGCCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGATAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACATGTGTTGCATTGCCAGAAGGCCATTGATGGACCGAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGCGCCAGCGGCTGCCGCAGCCAACCCTTTAGGGGTGAACCAAGCAGCTGTGCAGCCGCTGAATCCGGCACTCGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCACACACGATGCAGGGTGGTTACAGTGCTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCAGCTTACCCGAACCAGCAGGTCGGGCAGAGTGGCGGCTCTGGAAGAGCGCAACCTGGCGTGGGGCAGTATGGTGGTGTTGCTCCTTACATGGGCCACTAG 1410 0.5787 MGKKRKVAPKSSQTVEPPPKQHQPEPQQEYEEVEEEVEEEVEEEEEVEEEEEEEEEEEEEQEGGNEQKQQQEDEDDDPIPKLLEPFGKDQILSLLCEAAAKHRDVADRIRRVADEDAVHRKIFVHGLGWDTTAETLISAFRQYGEIEDCKAVTDKISGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAQQPAAAATSSGPAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDSAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGVGNNVQGHLMAPAAAAANPLGVNQAAVQPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAHTMQGGYSAQQNISPGVMSAYGSQVGLQAAYPNQQVGQSGGSGRAQPGVGQYGGVAPYMGH* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1770 469 MobiDBLite consensus disorder prediction 29 63 - -
Ahy6g1770 469 MobiDBLite consensus disorder prediction 1 84 - -
Ahy6g1770 469 SUPERFAMILY RNA-binding domain, RBD 207 313 IPR035979 GO:0003676
Ahy6g1770 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Ahy6g1770 469 PANTHER - 16 469 - -
Ahy6g1770 469 SUPERFAMILY RNA-binding domain, RBD 120 202 IPR035979 GO:0003676
Ahy6g1770 469 MobiDBLite consensus disorder prediction 64 83 - -
Ahy6g1770 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Ahy6g1770 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 295 IPR000504 GO:0003723
Ahy6g1770 469 CDD RRM_RBM24_RBM38_like 224 299 - -
Ahy6g1770 469 Coils Coil 27 74 - -
Ahy6g1770 469 Gene3D - 19 199 IPR012677 -
Ahy6g1770 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Ahy6g1770 469 PANTHER GEO13361P1-RELATED 16 469 - -
Ahy6g1770 469 SMART rrm1_1 225 297 IPR000504 GO:0003723
Ahy6g1770 469 SMART rrm1_1 121 193 IPR000504 GO:0003723
Ahy6g1770 469 Gene3D - 200 313 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1770 Ahy-Chr6 86009553 86014199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1770 223 303 C2H2 Transcription Factor Family AT2G19380 33.333 1.32e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1770 K12741 - gmx:100784200 511.916