Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1673 ATGTCATCATCAGAAACACCCCAACGGTGGACTCAGCAACAACAAGAAGAAGCAAAAGATAATATCAATGAAGATGAAATGAATAATAATAAGGAGCTGATGTTCGAGAAGGTTCTTACTCCAAGCGACGTTGGGATGCTCAACCGCCTCGTCGTCCCAAAGTCCCACGCGGAGGCGCATTTTCCGACCGGCGCCCACGGATACTCGGCCGAAGGGAAGGGCCTGCTTCTGAATTTCGAGGACCAATCAGGAAAACAATGGAAGTTCCGTTACTGCTATTGGAGCAGCAGCCAGAGCTATGTTCTCACCAAAGGATGGGGCCGCTACGTTAGGGAAAACCACCTTTCTGCTGGCGACGTCGTTTTGTTCAAGAGGCACCGCCTCCATCCAAATAATTTCTTTATTAGTTGGAGGGGCCGCGATGCTGGGACCATGCCTCCGGCGGCTAGAGGGAGGGGGAAGAGGAGGAGGAGGAGGGATGAGGGTACCAGTGGTGGTGATGGCAACAGTAAGAGTGTGGTGGTGAGTGATGCTGCTGTTTCTGTTTCTGTGGGGTGCTATCCTGCGCCTTCTTATCCTACGTCCCACCACCAACATCCATTCTCCTCATCCTATCATTCTGATGAATATTTTCTTCATGCAGGTGGAGAGTGCCAAGGTGCGAACGAAACGACAATGGTGGGAAACCCTTTAAGTTCAGGTTCGAGGATGCTGAGGCTGTTCGGGGTGAACATGGAATTGAATAATAATAATAATAATAATGAAACCTTCGCACCCTAA 780 0.4987 MSSSETPQRWTQQQQEEAKDNINEDEMNNNKELMFEKVLTPSDVGMLNRLVVPKSHAEAHFPTGAHGYSAEGKGLLLNFEDQSGKQWKFRYCYWSSSQSYVLTKGWGRYVRENHLSAGDVVLFKRHRLHPNNFFISWRGRDAGTMPPAARGRGKRRRRRDEGTSGGDGNSKSVVVSDAAVSVSVGCYPAPSYPTSHHQHPFSSSYHSDEYFLHAGGECQGANETTMVGNPLSSGSRMLRLFGVNMELNNNNNNNETFAP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1673 259 MobiDBLite consensus disorder prediction 1 24 - -
Ahy6g1673 259 MobiDBLite consensus disorder prediction 144 172 - -
Ahy6g1673 259 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 251 IPR044800 GO:0003700
Ahy6g1673 259 Pfam B3 DNA binding domain 35 139 IPR003340 GO:0003677
Ahy6g1673 259 Gene3D - 23 146 IPR015300 -
Ahy6g1673 259 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 9 251 - -
Ahy6g1673 259 SMART B3_2 35 141 IPR003340 GO:0003677
Ahy6g1673 259 SUPERFAMILY DNA-binding pseudobarrel domain 31 137 IPR015300 -
Ahy6g1673 259 MobiDBLite consensus disorder prediction 1 17 - -
Ahy6g1673 259 ProSiteProfiles B3 DNA-binding domain profile. 35 141 IPR003340 GO:0003677
Ahy6g1673 259 CDD B3_DNA 34 127 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1673 Ahy-Chr6 76628031 76631739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1673 31 255 RAV Transcription Factor Family AT5G06250 40.948 3.66e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy6g1673 B3 8.10E-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1673 - - ahf:112758698 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1922 16 100847900 100851665 Ahy6g1673 6 76628031 76631739 hybridization
Ahy6g1673 6 76628031 76631739 Ahy12g2913 12 118862422 118865401 PCT
Ahy6g1673 6 76628031 76631739 Ahy2g2500 2 101264497 101267476 PCT