LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy6g1614	ATGGCGGAAGAGCACCGATGCCAAGCTCCGGAAGGCCACAAACTCTGTGCCAATAATTGCGGCTTCTTCGGGAGCACAACCACCATGGACCTCTGCTCCAAGTGCTATAGAGATGTTCTCTTGAAGGAGCAAGAACAAGCCAAGACCAAATCCACCATCGAAACCGCTCTCTCCTCCTCCTCCACCTCAGCCCCAGCTCATCCATCTCCGCCGCCTCCAGCCGTAGATTCCCTCCCTCAACCATCACCGCTCATCGCCTTAGAATCGTCCGTATCGACGTCTCCAGCGGTTGGATCGGCGGTTCACACGAACCGATGCGCAGCATGCAGGAAACGGATCGGGTTGACCGGTTTTACATGTAGGTGCGGGATCACGTTTTGCGGGGCCCACAGGTACCCGGAGAAGCATGGGTGCGGGTTCGATTTCAAGACGGTAGGGAGGGACGAAATAGCGAGGGCGAATCCCGTGATCAAAGCCCAGAAGCTCGACAAGATTTGA	498	0.5643	MAEEHRCQAPEGHKLCANNCGFFGSTTTMDLCSKCYRDVLLKEQEQAKTKSTIETALSSSSTSAPAHPSPPPPAVDSLPQPSPLIALESSVSTSPAVGSAVHTNRCAACRKRIGLTGFTCRCGITFCGAHRYPEKHGCGFDFKTVGRDEIARANPVIKAQKLDKI*	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy6g1614	165	MobiDBLite	consensus disorder prediction	50	82	-	-
	Ahy6g1614	165	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	15	60	-	-
	Ahy6g1614	165	ProSiteProfiles	Zinc finger AN1-type profile.	100	146	IPR000058	GO:0008270
	Ahy6g1614	165	PANTHER	ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3	1	165	-	-
	Ahy6g1614	165	MobiDBLite	consensus disorder prediction	65	79	-	-
	Ahy6g1614	165	Pfam	AN1-like Zinc finger	106	142	IPR000058	GO:0008270
	Ahy6g1614	165	ProSiteProfiles	Zinc finger A20-type profile.	10	44	IPR002653	GO:0003677\|GO:0008270
	Ahy6g1614	165	SUPERFAMILY	AN1-like Zinc finger	99	160	IPR035896	-
	Ahy6g1614	165	Pfam	A20-like zinc finger	15	37	IPR002653	GO:0003677\|GO:0008270
	Ahy6g1614	165	SMART	A20_3	13	37	IPR002653	GO:0003677\|GO:0008270
	Ahy6g1614	165	Gene3D	-	1	65	-	-
	Ahy6g1614	165	Gene3D	-	85	161	IPR035896	-
	Ahy6g1614	165	SMART	AN1_Zf_4	106	143	IPR000058	GO:0008270
	Ahy6g1614	165	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	1	165	-	-
	Ahy6g1614	165	MobiDBLite	consensus disorder prediction	50	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy6g1614	Ahy-Chr6	70983289	70985029	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy6g1614	1	165	C2H2 Transcription Factor Family	AT3G52800	51.176	1.55e-50	158

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g1855	16	95945668	95947788	Ahy6g1614	6	70983289	70985029	hybridization
	Ahy6g1614	6	70983289	70985029	Ahy12g2954	12	119157141	119159125	PCT
	Ahy6g1614	6	70983289	70985029	Ahy2g2538	2	101559216	101561200	PCT