Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1568 ATGAACATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAGTTCCAACCCCATTTCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCCTCTGCGGTTACACCGTTGACTTCCGCCACCGCGAGGTTCCGAACTAACAGCGACAGGGACTCCGAAAGCAGCGACAGGTACCACCCGCAACCGCCACCGCACCAGGAGCTTGTATCTCAGTACAAGGCCGCGCTAGCTGAGCTCACTTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCAGGAGAGAACCTTTCTGCTGCGAAGGCCATTGCTGGCACCGTTTGTACCAACATTCTAGAGGTTCCAAATGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCATCAAGGCATACAAACAGGTTGATCCACCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAGGGATACTTTCCTCCGCAGACCCTTCAGATGATTGAAAAGGAACTTGGCTTCACACCTGCAGTCAATGGTTCGGCTTCTTCATCTGCTACACTCAGAAGTGAATCACAGTCACAACGCCCAGCTCATAGCATCCATGTGAATCCTAAGTATTTAGAACGACAGCGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACTCAAATGAGGATTCAGAGAGGTCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATCGTATTCAAAGAGATGCATATAACAATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATGGGGCCATAAAAAATAGTTCTGGTATTTCAAGTATTGGAACAACTGGCAGTAGGGTTACTGAGCTGGGACATGATAAAACTTGGTATAAAGCAGGAATCAGCGTGGCAGAGAACACGTCTAATCAAAGTAATGGTTTCAGTTTGAAGCTTGGTTTTTCGAATCGTGAAGCACCAAAGTCGATGAACTTGGGTGCACATCATCAGCCAACACAAAACTTAACTAGCATACAGAGCAGTGTAGTGCCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGATTGGTGATGGTGCAGCCAGCATTGCCAACAACATGAATACAGAACCATGGATGGGTGGTGATGATGAGAATTTGGATGGAGATCAATCCCAAATCTTGCACCATGATAGAGAAATATCTACTGCTAGGAAACAATCATTTGCATCTGGGGGGCATTCATCATTGCCATGGCAATTGCAGGAGCAGAGATCGAATGAAAAGTTGAATCTGAGGCCAGGTCACTCGGAAAAATTGTTGTCAGCTTTAGGTTGCTTACCAGCTAATACAAGTTCTTTGGTTGTCAGGATGCCAAATCAGTCTTCCATGCCAAATGCAACCAAAGATATGTCTGAAACTATGGGACAAAAGCAATTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGCAGCAGTCTGCATCATTGCCTGTAACAAAGCTCCACCCTCATCCAACACAAAATTTGTTGGAGCAAGACAATGGGAAGGCTTCTAAAACATCACAATTTCTGGGAGATCTGCAGAGACAATACATTAGAGATCAACCAGCTGCCCTTCCTCCCAATGCTCAAGTTGGTCGTTTGCATAGATCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGAGACTTCTTTTCTGCCAAGGCATCAGCAGCAGCCACTGGTCTCTTCCCAGACTGAAGTTATTGCAAAAACTAAGCCTCTCCACTCTAAAGTCTCTTTGGCCAGTGAAAGTTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGATTCCTCAACAAATCAATTACAAATAGTTTTCCTGGTACAAGTAGTAGTCTAGTTACAAAGAATCTTCCATCTGACTTAGGGGTTTGCCCAGCTCTATCAGGTAGACCCTCGTCTGCCACATTAATTTCTTCGGTATCTGCAGTTGCATCACCGTCAACATTAGTTCCTCCAGATGACGATTCTTCTATTCTGGATAACATATCACAAGCAAATACTGGACAGAAACCAAAGGTCTCTACAAAATTACCAACTTCCTCTAACATGAGCACTGTGTCAGCTCCAACCTCAACCGCTAGAAAAAACAATTCCTTGAATCCCATTGCAAACCTTTTAAGCTCACTGGTTGCAAAAGGTTTGATATCTACAGATTCGGAGTCATCGACTAAGGTACCAACAGAGGCATTGGTTCAATTGGAAGCCCGTACTGAAAGCATTACTGCCAGTAGCTCATTGCCAGTTCCTTCAGTTACTGGTTCCACAGTTCTCCCAGTAACATCCTCTAAAGTTGTGGAAGATGATGCAAAAGCCTCCCTGATCGTAAGTCAATCAACCAACACCAAAATAAGGAATATCATCGGCTTTGATTTTAAGCCTGATATAGTTCGAGAGATGCATCCCACTGTAATCAAGGGATTATTGGATGATAGTCAGCATCATTGCAGATTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTTTGCACGAGAAAGAGAGCAACATGGTCTAATTAGAGCATCCAGAAAATGGTATGAGAATTGGTTTCTGTCTGAGCCTAGTGATTCTGTAGACGATTATTGCGAGGAAACAGACAGGAGTCCATTTGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGTGATCTGTTTGAAGATGTGTACTGTCAAGAGAGGGATGAATGGATGTTCAAAGGTGCTGTTTACATAAACAACTTAGATAGAAATGGTGAGATGGAAAGTAGAAATGTGGGGCCAATTGTTCATGCTAAATGTTTATCTGAGAACTCAGTAGCTGGCGGCATCAAGATGGAACAGGACTGA 3084 0.4397 MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFRTNSDRDSESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSMRHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLERQRLQQSSRIKGVANDTTRAILNSNEDSERSSRVLGASRPWLDPRINMHRIQRDAYNNSVPEKSLAESYGAIKNSSGISSIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSLKLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASIANNMNTEPWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNEKLNLRPGHSEKLLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPTSVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNAQVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQSKSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAVASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTARKNNSLNPIANLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSKVVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLKQEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPADESQCLCVLCGDLFEDVYCQERDEWMFKGAVYINNLDRNGEMESRNVGPIVHAKCLSENSVAGGIKMEQD* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1568 1027 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 214 238 - -
Ahy6g1568 1027 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1023 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 61 75 - -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 1 80 - -
Ahy6g1568 1027 Gene3D - 76 204 IPR008942 -
Ahy6g1568 1027 Pfam CID domain 88 198 IPR006569 -
Ahy6g1568 1027 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1023 - -
Ahy6g1568 1027 ProSitePatterns Zinc finger C2H2 type domain signature. 889 909 IPR013087 -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 28 60 - -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 604 627 - -
Ahy6g1568 1027 SMART 558neu5 82 204 IPR006569 -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 1 26 - -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 720 769 - -
Ahy6g1568 1027 SUPERFAMILY ENTH/VHS domain 79 208 IPR008942 -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 509 546 - -
Ahy6g1568 1027 CDD CID_Pcf11 84 196 - -
Ahy6g1568 1027 MobiDBLite consensus disorder prediction 214 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1568 Ahy-Chr6 60668929 60675627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1568 77 407 C2H2 Transcription Factor Family AT4G04885 38.710 6.40e-54 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1568 K14400 - gmx:100788958 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy6g1568 6 60668929 60675627 Ahy12g2976 12 119356951 119363612 PCT
Ahy6g1568 6 60668929 60675627 Ahy2g2561 2 101759026 101765687 PCT
Ahy12g2976 12 119356951 119363612 Ahy6g1568 6 60668929 60675627 PCT
Ahy2g2561 2 101759026 101765687 Ahy6g1568 6 60668929 60675627 PCT