Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1556 ATGGAGTTCTGGGGTAACCATAATCATCTTTCTTCCTCACTTCTTATGAACCTTAACATTCCCACTTTCTTTTGTGTTGAAGTAAAAAGCGGAGAAACTCTCGAGGTTGATCCGGGATATGGCAAGATGATCCATCTTTCAATGGCATGCCTGGGTGAGGTTAAGAAGGATAAAGGCGAACCAGTGACTGTGTATGTGAAATTTGGTGACCAGAGGCTTGTGATTGGAACACTTACTTCTGAGAACTTTCCTCAGATTTCTTATGATTTAATATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCTGAACCTCCTTTGGAATCTGAAAATGAAGAAGACTCTGAAGAGTTCGAAGATATTCCAGTTGCTGCTGCCAATGGAAATTCTGAGCTTGAGGTAAAGAATGCTGTCAAACTTGATGCCAATGAAGCTAAACAAAAGGAGAAAATAGGGGATCCAAGAAAGAAAGAGAAAGCAAATGAAAAGGATGCAAATGGTGAAGATGAGGAAGATTCATCTGATGCTGACTCTGATGAATCTGATGAGGATTCTAGTGAAGATGAGGCCATGGCAAATGGTGAGAAAGGTGGTGAAGGTGAAGATGACTCTGATGATGATGATGACAAGGACGAAGATGATGACGATGACGATGACGATGAATCTGACAAGGAGGAGACACTCAAGAAGGCTGAATTGAGCAAAAAGAGGGTTCATGAATCATCCAAGAAAACACCTGTTCCAGAGAAGAAGGCAAAATTTGTTACTCCTGAAAAGATTGACAACAAGGGTGGTGTTCATGTTGCAACTCCTTACCCAACTAAGCAGGCTATCAAGGCAGCTGCCAATAACAGGCAACCGGTGAAGCAGCAGACTCCAAAGTTAGTTGGAGACTATGGCTGCAAGGATTGCAACAGGTTGTTTAAGACAGAAGATGCCTTAAACTCCCATAACAAGGCCAAGCACAGTGCTAAGTGA 1011 0.4174 MEFWGNHNHLSSSLLMNLNIPTFFCVEVKSGETLEVDPGYGKMIHLSMACLGEVKKDKGEPVTVYVKFGDQRLVIGTLTSENFPQISYDLIFEKEFELSHNWKNGSVFFTGYKAEPPLESENEEDSEEFEDIPVAAANGNSELEVKNAVKLDANEAKQKEKIGDPRKKEKANEKDANGEDEEDSSDADSDESDEDSSEDEAMANGEKGGEGEDDSDDDDDKDEDDDDDDDDESDKEETLKKAELSKKRVHESSKKTPVPEKKAKFVTPEKIDNKGGVHVATPYPTKQAIKAAANNRQPVKQQTPKLVGDYGCKDCNRLFKTEDALNSHNKAKHSAK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1556 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 336 IPR013087 -
Ahy6g1556 336 MobiDBLite consensus disorder prediction 210 234 - -
Ahy6g1556 336 MobiDBLite consensus disorder prediction 178 200 - -
Ahy6g1556 336 Pfam Nucleoplasmin-like domain 23 112 IPR041232 -
Ahy6g1556 336 ProSitePatterns Zinc finger C2H2 type domain signature. 312 333 IPR013087 -
Ahy6g1556 336 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 23 332 - -
Ahy6g1556 336 Gene3D Nucleoplasmin core domain 17 116 - -
Ahy6g1556 336 Pfam C2H2-type zinc finger 310 334 - -
Ahy6g1556 336 MobiDBLite consensus disorder prediction 148 177 - -
Ahy6g1556 336 MobiDBLite consensus disorder prediction 235 271 - -
Ahy6g1556 336 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 23 332 - -
Ahy6g1556 336 MobiDBLite consensus disorder prediction 137 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1556 Ahy-Chr6 58248054 58252209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1556 23 115 C2H2 Transcription Factor Family AT5G03740 50.538 2.50e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g1556 NPL 4.10E-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1556 - - ccaj:109796568 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1788 16 80466394 80470275 Ahy6g1556 6 58248054 58252209 hybridization