Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1538 ATGGAGTGGAATGAAAGCACAAGATCCTTTGCTCCTCGTGCTGAGTCTTCACTAAGCTTCTTTCACAACTATAGCAGCAGTAGCAGCAACAATAACAATAGCAGCAACCCATCATATCCAAGAAGTGAAGTGAAACAAGCAGCATTGGTGGAGACACCACAAGAGTCGCTTCATGCAATGGCGGAAGTAAAGTACGCGGGCCACCGCGAGAAGAAGAAGCGGTTAACAAGCAGCCAGATTGAGTCATTGGAGAGAAGCTTTCAGGAGGAGATAAAGTTGGACAGTGACAGGAAGATAAAGCTTTCCAGGGAGCTTGGCCTCCAGCCTCGCCAAATCGCGGTTTGGTTCCAGAATAGGCGAACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACTTTGCCCTTAAACACGAATTTGATCACATCTCCAATGAGAAGCACAAGCTTCAAGAAGAGGTTATGATGTTGAAGGCAAGCCTAAGAGAGCAAGCATTTAGAGCACATGTATCTGGTGTTTACACAGAAATGTCTGGGGCAGAAACAGTAGAAAGCACGTCAGAGATGTTGCATGGATCCAAGGGAATGATTCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAGCAGATTGTAGATGGCTACAGCTGCTTTCTTGTGGAGGATCATCATAACACTGTTCCACTGCCTCGATGGGCCGTTGCACCATATTGTCCCTAA 750 0.4293 MEWNESTRSFAPRAESSLSFFHNYSSSSSNNNNSSNPSYPRSEVKQAALVETPQESLHAMAEVKYAGHREKKKRLTSSQIESLERSFQEEIKLDSDRKIKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYFALKHEFDHISNEKHKLQEEVMMLKASLREQAFRAHVSGVYTEMSGAETVESTSEMLHGSKGMIHNNNNNNNNNNNNNNNNNNNNNQQIVDGYSCFLVEDHHNTVPLPRWAVAPYCP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1538 249 Gene3D - 66 131 - -
Ahy6g1538 249 Pfam Homeodomain 69 124 IPR001356 GO:0003677
Ahy6g1538 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 241 IPR045224 GO:0003700
Ahy6g1538 249 SUPERFAMILY Homeodomain-like 56 128 IPR009057 -
Ahy6g1538 249 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Ahy6g1538 249 Pfam Homeobox associated leucine zipper 126 160 IPR003106 GO:0006355|GO:0043565
Ahy6g1538 249 MobiDBLite consensus disorder prediction 21 43 - -
Ahy6g1538 249 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Ahy6g1538 249 MobiDBLite consensus disorder prediction 193 218 - -
Ahy6g1538 249 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 241 - -
Ahy6g1538 249 CDD homeodomain 69 127 IPR001356 GO:0003677
Ahy6g1538 249 SMART HOX_1 68 130 IPR001356 GO:0003677
Ahy6g1538 249 MobiDBLite consensus disorder prediction 21 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1538 Ahy-Chr6 53917749 53919211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1538 71 159 Homeobox Transcription Factor Family AT5G03790 74.157 9.41e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ahy6g1538 Homeodomain 2.00E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy6g1538 - - adu:110272999 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2991 12 119534895 119537163 Ahy6g1538 6 53917749 53919211 PCT
Ahy2g2576 2 101936970 101939238 Ahy6g1538 6 53917749 53919211 PCT