Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy6g1521 ATGGAGCAGCAGGAGGAAGAGGAACATGTGGTGCGCAGCAACAATAATAACAACAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACTTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACGGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGCGGAGGCCGGGTAACCCGCCATAATAACAAAAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACTACAGAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACAGCTCCATGTACTGCCGCAGCACCACCACCACCAAAACAACAACCGCCATGGAAACCCCTGCTCCTATTTCCAAGACAAGTAAGGTTCATGAATGTTCCATTTGCGGTGCCGAATTCACTTCTGGCCAAGCTTTGGGTGGTCATATGAGGAGGCACAGGGGTTTCTTGACCGTTTCTTCCGCCACAGCCGCAACCACAACCACCACCACTACAACTACATCATCATCTATTAGTGGTGCTAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGACCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTATCAAAGTTCTCGTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG 912 0.4616 MEQQEEEEHVVRSNNNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRVTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTEENYNNDPTSTALTLQISNSSMYCRSTTTTKTTTAMETPAPISKTSKVHECSICGAEFTSGQALGGHMRRHRGFLTVSSATAATTTTTTTTTSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVSKFSFQSKEKVIVFSSAASLVDCHY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy6g1521 303 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Ahy6g1521 303 PANTHER ZINC FINGER PROTEIN ZAT5 96 303 - -
Ahy6g1521 303 SUPERFAMILY beta-beta-alpha zinc fingers 105 214 IPR036236 -
Ahy6g1521 303 PANTHER ZINC FINGER PROTEIN ZAT5 12 99 - -
Ahy6g1521 303 Coils Coil 239 259 - -
Ahy6g1521 303 SMART c2h2final6 192 214 IPR013087 -
Ahy6g1521 303 SMART c2h2final6 106 128 IPR013087 -
Ahy6g1521 303 MobiDBLite consensus disorder prediction 229 254 - -
Ahy6g1521 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 96 303 - -
Ahy6g1521 303 MobiDBLite consensus disorder prediction 45 72 - -
Ahy6g1521 303 Pfam C2H2-type zinc finger 191 215 - -
Ahy6g1521 303 Pfam C2H2-type zinc finger 106 131 - -
Ahy6g1521 303 Gene3D Classic Zinc Finger 103 214 - -
Ahy6g1521 303 MobiDBLite consensus disorder prediction 45 63 - -
Ahy6g1521 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Ahy6g1521 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 216 IPR013087 -
Ahy6g1521 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 12 99 - -
Ahy6g1521 303 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Ahy6g1521 303 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy6g1521 Ahy-Chr6 47870659 47872090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy6g1521 18 303 C2H2 Transcription Factor Family AT5G03510 38.291 2.57e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy6g1521 zf-C2H2_6 2.00E-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g1696 16 59206202 59207612 Ahy6g1521 6 47870659 47872090 hybridization
Ahy6g1521 6 47870659 47872090 Ahy12g3028 12 119827169 119828313 PCT
Ahy6g1521 6 47870659 47872090 Ahy2g2613 2 102229244 102230388 PCT
Ahy12g3028 12 119827169 119828313 Ahy6g1521 6 47870659 47872090 PCT
Ahy2g2613 2 102229244 102230388 Ahy6g1521 6 47870659 47872090 PCT